HGA: de novo genome assembly method for bacterial genomes using high coverage short sequencing reads
Author:
Funder
Institute of Food and Agricultural Sciences
Publisher
Springer Science and Business Media LLC
Subject
Genetics,Biotechnology
Link
http://link.springer.com/content/pdf/10.1186/s12864-016-2515-7
Reference24 articles.
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3. Jeck WR, Reinhardt JA, Baltrus DA, Hickenbotham MT, Magrini V, Mardis ER, Dangl JL, Jones CD. Extending assembly of short dna sequences to handle error. Bioinformatics. 2007; 23(21):2942–4.
4. Margulies M, Egholm M, Altman WE, Attiya S, Bader JS, Bemben LA, Berka J, Braverman MS, Chen YJ, Chen Z, et al. Genome sequencing in microfabricated high-density picolitre reactors. Nature. 2005; 437(7057):376–80.
5. Simpson JT, Durbin R. Efficient de novo assembly of large genomes using compressed data structures. Genome Res. 2012; 22(3):549–56.
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