Species classifier choice is a key consideration when analysing low-complexity food microbiome data-Reference-Cited by-同舟云学术

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Species classifier choice is a key consideration when analysing low-complexity food microbiome data

Published:2018-03-20 Issue:1 Volume:6 Page:
ISSN:2049-2618
Container-title:Microbiome
language:en
Short-container-title:Microbiome

Author:

Walsh Aaron M.,Crispie Fiona,O’Sullivan Orla,Finnegan Laura,Claesson Marcus J.,Cotter Paul D.

Funder

Science Foundation Ireland

Publisher

Springer Science and Business Media LLC

Subject

Microbiology (medical),Microbiology

Link

http://link.springer.com/content/pdf/10.1186/s40168-018-0437-0.pdf

Reference67 articles.

1. Consortium HMP. Structure, function and diversity of the healthy human microbiome. Nature. 2012;486(7402):207.

2. Fierer N, Leff JW, Adams BJ, Nielsen UN, Bates ST, Lauber CL, Owens S, Gilbert JA, Wall DH, Caporaso JG. Cross-biome metagenomic analyses of soil microbial communities and their functional attributes. Proc Natl Acad Sci. 2012;109(52):21390–5.

3. Lauro FM, McDougald D, Thomas T, Williams TJ, Egan S, Rice S, DeMaere MZ, Ting L, Ertan H, Johnson J. The genomic basis of trophic strategy in marine bacteria. Proc Natl Acad Sci. 2009;106(37):15527–33.

4. Gilbert JA, Dupont CL. Microbial metagenomics: beyond the genome. Annu Rev Mar Sci. 2011;3:347–71.

5. Ranjan R, Rani A, Metwally A, McGee HS, Perkins DL. Analysis of the microbiome: advantages of whole genome shotgun versus 16S amplicon sequencing. Biochem Biophys Res Commun. 2016;469(4):967–77.

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