Vector sequence contamination of the Plasmodium vivax sequence database in PlasmoDB and In silico correction of 26 parasite sequences-Reference-Cited by-同舟云学术

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Vector sequence contamination of the Plasmodium vivax sequence database in PlasmoDB and In silico correction of 26 parasite sequences

Published:2015-06-12 Issue:1 Volume:8 Page:
ISSN:1756-3305
Container-title:Parasites & Vectors
language:en
Short-container-title:Parasites Vectors

Author:

Tao Zhi-Yong,Sui Xu,Jun Cao,Culleton Richard,Fang Qiang,Xia Hui,Gao Qi

Funder

the National S & T Major Program

the Open Programme of Key Laboratory on Technology for Parasitic Disease Prevention and Control of Chinese Ministry of Health

the Anhui Provincial Natural Science Foundation

the Key Program of Bengbu Medical College Science & Technology Development Fund

the Key Program of Bengbu Medical College Natural Science Fund

Publisher

Springer Science and Business Media LLC

Subject

Infectious Diseases,Parasitology

Link

http://link.springer.com/content/pdf/10.1186/s13071-015-0927-x.pdf

Reference8 articles.

1. Gardner MJ, Hall N, Fung E, White O, Berriman M, Hyman RW, et al. Genome sequence of the human malaria parasite Plasmodium falciparum. Nature. 2002;419:498–511.

2. Carlton JM, Adams JH, Silva JC, Bidwell SL, Lorenzi H, Caler E, et al. Comparative genomics of the neglected human malaria parasite Plasmodium vivax. Nature. 2006;455(7214):757–63.

3. Carlton J. The Plasmodium vivax genome sequencing project. Trends Parasitol. 2003;19(5):227–31.

4. Merchant S, Wood DE, Salzberg SL. Unexpected cross-species contamination in genome sequencing projects. PeerJ. 2014;2, e675.

5. Lu F, Jiang H, Ding J, Mu J, Valenzuela JG, Ribeiro JM, et al. cDNA sequences reveal considerable gene prediction inaccuracy in the Plasmodium falciparum genome. BMC Genomics. 2007;8:255.

Cited by 3 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. Parasite infection of public databases: a data mining approach to identify apicomplexan contaminations in animal genome and transcriptome assemblies;BMC Genomics;2017-01-19

2. Genomic Analysis and In Vivo Functional Validation of Brain Somatic Mutations Leading to Focal Cortical Malformations;Neuromethods;2017

3. Vecuum: identification and filtration of false somatic variants caused by recombinant vector contamination;Bioinformatics;2016-06-22

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