A relation based measure of semantic similarity for Gene Ontology annotations

Author:

Sheehan Brendan,Quigley Aaron,Gaudin Benoit,Dobson Simon

Publisher

Springer Science and Business Media LLC

Subject

Applied Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Structural Biology

Reference28 articles.

1. Lord P, Stevens R, Brass A, Goble CA: Semantic Similarity Measures as Tools for Exploring the Gene Ontology. Pacific Symposium on Biocomputing 2003, 8: 601–612.

2. Lord P, Stevens R, Brass A, Goble C: Investigating semantic similarity measures across the Gene Ontology: the relationship between sequence and annotation. Bioinformatics 2003, 19(10):1275–1283.

3. Sevilla J, Segura V, Podhorski A, Guruceaga JE Mato, Martinez-Cruz L, Corrales F, Rubio A: Correlation between gene expression and GO semantic similarity. IEEE/ACM Transactions on Computational Biology and Bioinformatics 2005, 2(4):330–338.

4. Couto FM, Silva MJ, Coutinho PM: Measuring semantic similarity between Gene Ontology terms, Data and Knowledge Engineering. Business Process Management – Where business processes and web services meet 2007, 61: 137–152.

5. Lei Z, Dai Y: Assessing protein similarity with Gene Ontology and its use in subnuclear localization prediction. BMC Bioinformatics 2006, 7: 491.

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