A <i>De Novo</i> Whole Genome Assembly and Annotation of <i>Parelaphostrongylus tenuis</i>-Reference-Cited by-同舟云学术

A De Novo Whole Genome Assembly and Annotation of Parelaphostrongylus tenuis

Published:2024-03-01 Issue:1 Volume:56 Page:
ISSN:2640-396X
Container-title:Journal of Nematology
language:en
Short-container-title:

Author:

Garwood Tyler J.¹,Richards Jessie E.²,Macchietto Marissa G.³,Gerhold Richard W.²,Kania Stephen A.²,Garbe John R.⁴,Fountain-Jones Nicholas M.⁵,Larsen Peter A.⁶,Wolf Tiffany M.¹

Affiliation:

1. Department of Veterinary Population Medicine, College of Veterinary Medicine , University of Minnesota-Twin Cities , Room 495 Animal Science/Veterinary Medicine Building, 1988 Fitch Avenue , St. Paul , MN ,

2. Department of Biomedical and Diagnostic Sciences, College of Veterinary Medicine , University of Tennessee-Knoxville , 2407 River Drive , Knoxville , TN ,

3. Minnesota Supercomputing Institute , University of Minnesota-Twin Cities , 117 Pleasant Street SE, 547 Walter Library , Minneapolis , MN ,

4. Genomics Center , University of Minnesota-Twin Cities , 2231 6th Street SE , Minneapolis , MN ,

5. School of Natural Sciences , University of Tasmania , Private Bag 37 , Hobart , Tasmania , Australia

6. Department of Veterinary and Biomedical Sciences, College of Veterinary Medicine , University of Minnesota-Twin Cities , Room 239B Veterinary Science Building, 1971 Commonwealth Avenue , Saint Paul , MN ,

Abstract

Abstract Parelaphostrongylus tenuis causes ungulate morbidity and mortality in eastern and central North America, but no reference genome sequence exists to facilitate research. Here, we present a P. tenuis genome assembly and annotation, generated with PacBio and Illumina technologies. The assembly is 491 Mbp, with 7285 scaffolds and 185 kb N50.

Publisher

Walter de Gruyter GmbH

Link

https://www.sciendo.com/pdf/10.2478/jofnem-2024-0009

Reference34 articles.

1. Bolger, A. M., Lohse, M., and Usadel, B. 2014. Trimmomatic: A flexible trimmer for Illumina sequence data. Bioinformatics 30:2114–2120.

2. Buchfink, B., Reuter, K., and Drost, H. G. 2021. Sensitive protein alignments at tree-of-life scale using DIAMOND. Nature Methods 18:366–368.

3. Carreno, R. A. and Hoberg, E. P. 1999. Evolutionary relationships among the Protostrongylidae (Nematoda: Metastrongyloidea) as inferred from morphological characters, with consideration of parasite-host coevolution. Journal of Parasitology 85:638–348.

4. Carstensen, M., Hildebrand, E. C., Plattner, D., Dexter, M., St-Louis, V., Jennelle, C., and Wright, R. G. 2017. Determining cause-specific mortality of adult moose in northeast Minnesota, February 2013–July 2017. St. Paul, MN: Minnesota Department of Natural Resources.

5. Dobin, A., Davis, C. A., Schlesinger, F., Drenkow, J., Zaleski, C., Jha, S., Batut, P., Chaisson, M., and Gingeras, T. R. 2013. STAR: Ultrafast universal RNA-seq aligner. Bioinformatics 29:15–21.