A travel guide to Cytoscape plugins-Reference-Cited by-同舟云学术

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A travel guide to Cytoscape plugins

Published:2012-11 Issue:11 Volume:9 Page:1069-1076
ISSN:1548-7091
Container-title:Nature Methods
language:en
Short-container-title:Nat Methods

Author:

Saito Rintaro,Smoot Michael E,Ono Keiichiro,Ruscheinski Johannes,Wang Peng-Liang,Lotia Samad,Pico Alexander R,Bader Gary D,Ideker Trey

Publisher

Springer Science and Business Media LLC

Subject

Cell Biology,Molecular Biology,Biochemistry,Biotechnology

Link

http://www.nature.com/articles/nmeth.2212.pdf

Reference65 articles.

1. Cline, M.S. et al. Integration of biological networks and gene expression data using Cytoscape. Nat. Protoc. 2, 2366–2382 (2007).

2. Shannon, P. et al. Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res. 13, 2498–2504 (2003).

3. Yeung, N., Cline, M.S., Kuchinsky, A., Smoot, M.E. & Bader, G.D. Exploring biological networks with Cytoscape software. Curr. Protoc. Bioinformatics 23, 8.13 (2008).

4. Hermjakob, H. et al. The HUPO PSI's molecular interaction format—a community standard for the representation of protein interaction data. Nat. Biotechnol. 22, 177–183 (2004).

5. Demir, E. et al. The BioPAX community standard for pathway data sharing. Nat. Biotechnol. 28, 935–942 (2010).

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