Monitoring structural changes in nucleic acids with single residue spatial and millisecond time resolution by quantitative hydroxyl radical footprinting-Reference-Cited by-同舟云学术

Monitoring structural changes in nucleic acids with single residue spatial and millisecond time resolution by quantitative hydroxyl radical footprinting

Published:2008-02 Issue:2 Volume:3 Page:288-302
ISSN:1754-2189
Container-title:Nature Protocols
language:en
Short-container-title:Nat Protoc

Author:

Shcherbakova Inna,Brenowitz Michael

Publisher

Springer Science and Business Media LLC

Subject

General Biochemistry, Genetics and Molecular Biology

Link

http://www.nature.com/articles/nprot.2007.533.pdf

Reference33 articles.

1. Galas, D.J. & Schmitz, A. DNAse footprinting: a simple method for the detection of protein-DNA binding specificity. Nucleic Acids Res. 5, 3157–3170 (1978).

2. Latham, J.A. & Cech, T.R. Defining the inside and outside of a catalytic RNA molecule. Science 245, 276–282 (1989).

3. Petri, V. & Brenowitz, M. Quantitative nucleic acids footprinting: thermodynamic and kinetic approaches. Curr. Opin. Biotechnol. 8, 36–44 (1997).

4. Buxton, G.V., Greenstock, C.L., Helman, W.P. & Ross, A.B. Critical review of rate constants for reactions of hydrated electrons, hydrogen atoms and hydroxyl radicals in aqueous solution. J. Phys. Chem. Ref. Data 17, 513–886 (1988).

5. Tullius, T.D. & Dombroski, B.A. Hydroxyl radical 'footprinting': high-resolution information about DNA-protein contacts and application to lambda repressor and Cro protein. Proc. Natl. Acad. Sci. USA 83, 5469–5473 (1986).

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