Endogenous microRNA sponges: evidence and controversy

Author:

Thomson Daniel W.,Dinger Marcel E.

Publisher

Springer Science and Business Media LLC

Subject

Genetics(clinical),Genetics,Molecular Biology

Reference146 articles.

1. Quek, X. C. et al. lncRNAdb v2.0: expanding the reference database for functional long noncoding RNAs. Nucleic Acids Res. 43, D168–D173 (2015).

2. Salmena, L., Poliseno, L., Tay, Y., Kats, L. & Pandolfi, P. P. A ceRNA hypothesis: the Rosetta Stone of a hidden RNA language? Cell 146, 353–358 (2011). This commentary introduced the hypothesis that RNA–RNA competition and crosstalk could universally affect gene expression, coining the term 'ceRNA hypothesis'.

3. Broderick, J. A. & Zamore, P. D. Competitive endogenous RNAs cannot alter microRNA function in vivo. Mol. Cell 54, 711–713 (2014).

4. Denzler, R., Agarwal, V., Stefano, J., Bartel, D. P. & Stoffel, M. Assessing the ceRNA hypothesis with quantitative measurements of miRNA and target abundance. Mol. Cell 54, 766–776 (2014). This study used quantitative measurements of target abundance and controlled overexpression to conclude that physiological expression of individual competing transcripts was insufficient to silence miR-122, a miRNA that is highly expressed in liver.

5. Bosson, A. D., Zamudio, J. R. & Sharp, P. A. Endogenous miRNA and target concentrations determine susceptibility to potential ceRNA competition. Mol. Cell 56, 347–359 (2014). This study measured the active miRNA target pool using AGO iCLIP to show that the majority of active miRNAs are probably not susceptible to ceRNA competition. Although exceptionally low target abundance can create a scenario of physiological RNA competition, such as the example of the miR-25 miRNA family.

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