Iterative correction of Hi-C data reveals hallmarks of chromosome organization-Reference-Cited by-同舟云学术

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Iterative correction of Hi-C data reveals hallmarks of chromosome organization

Published:2012-09-02 Issue:10 Volume:9 Page:999-1003
ISSN:1548-7091
Container-title:Nature Methods
language:en
Short-container-title:Nat Methods

Author:

Imakaev Maxim,Fudenberg Geoffrey,McCord Rachel Patton,Naumova Natalia,Goloborodko Anton,Lajoie Bryan R,Dekker Job,Mirny Leonid A

Publisher

Springer Science and Business Media LLC

Subject

Cell Biology,Molecular Biology,Biochemistry,Biotechnology

Link

http://www.nature.com/articles/nmeth.2148.pdf

Reference22 articles.

1. Cheung, M.S., Down, T.A., Latorre, I. & Ahringer, J. Systematic bias in high-throughput sequencing data and its correction by BEADS. Nucleic Acids Res. 39, e103 (2011).

2. Quail, M.A. et al. A large genome center's improvements to the Illumina sequencing system. Nat. Methods 5, 1005–1010 (2008).

3. Teytelman, L. et al. Impact of chromatin structures on DNA processing for genomic analyses. PLoS ONE 4, e6700 (2009).

4. Simonis, M. et al. Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture-on-chip (4C). Nat. Genet. 38, 1348–1354 (2006).

5. Zhao, Z. et al. Circular chromosome conformation capture (4C) uncovers extensive networks of epigenetically regulated intra- and interchromosomal interactions. Nat. Genet. 38, 1341–1347 (2006).

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