A dynamic knowledge graph approach to distributed self-driving laboratories

Author:

Bai JiaruORCID,Mosbach SebastianORCID,Taylor Connor J.,Karan Dogancan,Lee Kok Foong,Rihm Simon D.ORCID,Akroyd JethroORCID,Lapkin Alexei A.ORCID,Kraft MarkusORCID

Abstract

AbstractThe ability to integrate resources and share knowledge across organisations empowers scientists to expedite the scientific discovery process. This is especially crucial in addressing emerging global challenges that require global solutions. In this work, we develop an architecture for distributed self-driving laboratories within The World Avatar project, which seeks to create an all-encompassing digital twin based on a dynamic knowledge graph. We employ ontologies to capture data and material flows in design-make-test-analyse cycles, utilising autonomous agents as executable knowledge components to carry out the experimentation workflow. Data provenance is recorded to ensure its findability, accessibility, interoperability, and reusability. We demonstrate the practical application of our framework by linking two robots in Cambridge and Singapore for a collaborative closed-loop optimisation for a pharmaceutically-relevant aldol condensation reaction in real-time. The knowledge graph autonomously evolves toward the scientist’s research goals, with the two robots effectively generating a Pareto front for cost-yield optimisation in three days.

Funder

RCUK | Engineering and Physical Sciences Research Council

Alexander von Humboldt-Stiftung

Pharma Innovation Platform Singapore (PIPS) via grant to CARES 5 Ltd “Data2Knowledge, C12”

Cambridge Commonwealth, European and International Trust

China Scholarship Council

Publisher

Springer Science and Business Media LLC

Subject

General Physics and Astronomy,General Biochemistry, Genetics and Molecular Biology,General Chemistry,Multidisciplinary

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