RAiSD detects positive selection based on multiple signatures of a selective sweep and SNP vectors

Author:

Alachiotis Nikolaos,Pavlidis Pavlos

Publisher

Springer Science and Business Media LLC

Subject

General Agricultural and Biological Sciences,General Biochemistry, Genetics and Molecular Biology,Medicine (miscellaneous)

Reference37 articles.

1. Schaffner, S. & Sabeti, P. Evolutionary adaptation in the human lineage. Nat. Educ. 1, 14 (2008).

2. De Groot, N. G. & Bontrop, R. E. The hiv-1 pandemic: does the selective sweep in chimpanzees mirror humankinds future? Retrovirology 10, 53 (2013).

3. Alam, M. T. et al. Selective sweeps and genetic lineages of plasmodium falciparum drug-resistant alleles in ghana. J. Infect. Dis. 203, 220–227 (2011).

4. Smith, J. M. & Haigh, J. The hitch-hiking effect of a favourable gene. Genet. Res. 23, 23–35 (1974).

5. Braverman, J. M., Hudson, R. R., Kaplan, N. L., Langley, C. H. & Stephan, W. The hitchhiking effect on the site frequency spectrum of dna polymorphisms. Genetics 140, 783–796 (1995).

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