A framework for detecting noncoding rare-variant associations of large-scale whole-genome sequencing studies-Reference-Cited by-同舟云学术

A framework for detecting noncoding rare-variant associations of large-scale whole-genome sequencing studies

Published:2022-10-27 Issue:12 Volume:19 Page:1599-1611
ISSN:1548-7091
Container-title:Nature Methods
language:en
Short-container-title:Nat Methods

Author:

Li Zilin^ORCID,Li Xihao^ORCID,Zhou Hufeng,Gaynor Sheila M.,Selvaraj Margaret Sunitha^ORCID,Arapoglou Theodore,Quick Corbin,Liu Yaowu,Chen Han,Sun Ryan,Dey Rounak,Arnett Donna K.,Auer Paul L.,Bielak Lawrence F.^ORCID,Bis Joshua C.,Blackwell Thomas W.,Blangero John,Boerwinkle Eric,Bowden Donald W.,Brody Jennifer A.^ORCID,Cade Brian E.,Conomos Matthew P.^ORCID,Correa Adolfo,Cupples L. Adrienne,Curran Joanne E.^ORCID,de Vries Paul S.,Duggirala Ravindranath,Franceschini Nora,Freedman Barry I.^ORCID,Göring Harald H. H.,Guo Xiuqing^ORCID,Kalyani Rita R.,Kooperberg Charles^ORCID,Kral Brian G.,Lange Leslie A.,Lin Bridget M.,Manichaikul Ani,Manning Alisa K.,Martin Lisa W.,Mathias Rasika A.,Meigs James B.,Mitchell Braxton D.,Montasser May E.,Morrison Alanna C.,Naseri Take,O’Connell Jeffrey R.,Palmer Nicholette D.^ORCID,Peyser Patricia A.^ORCID,Psaty Bruce M.^ORCID,Raffield Laura M.,Redline Susan,Reiner Alexander P.^ORCID,Reupena Muagututi’a Sefuiva,Rice Kenneth M.^ORCID,Rich Stephen S.^ORCID,Smith Jennifer A.^ORCID,Taylor Kent D.,Taub Margaret A.,Vasan Ramachandran S.^ORCID,Weeks Daniel E.^ORCID,Wilson James G.,Yanek Lisa R.^ORCID,Zhao Wei,Abe Namiko,Abecasis Gonçalo,Aguet Francois,Albert Christine,Almasy Laura,Alonso Alvaro,Ament Seth,Anderson Peter,Anugu Pramod,Applebaum-Bowden Deborah,Ardlie Kristin,Arking Dan,Ashley-Koch Allison,Aslibekyan Stella,Assimes Tim,Avramopoulos Dimitrios,Ayas Najib,Balasubramanian Adithya,Barnard John,Barnes Kathleen,Barr R. Graham,Barron-Casella Emily,Barwick Lucas,Beaty Terri,Beck Gerald,Becker Diane,Becker Lewis,Beer Rebecca,Beitelshees Amber,Benjamin Emelia,Benos Takis,Bezerra Marcos,Blue Nathan,Bowler Russell,Broeckel Ulrich,Broome Jai,Brown Deborah,Bunting Karen,Burchard Esteban,Bustamante Carlos,Buth Erin,Cardwell Jonathan,Carey Vincent,Carrier Julie,Carson April,Carty Cara,Casaburi Richard,Casas Romero Juan P.,Casella James,Castaldi Peter,Chaffin Mark,Chang Christy,Chang Yi-Cheng,Chasman Daniel,Chavan Sameer,Chen Bo-Juen,Chen Wei-Min,Chen Yii-Der Ida,Cho Michael,Choi Seung Hoan,Chuang Lee-Ming,Chung Mina,Chung Ren-Hua,Clish Clary,Comhair Suzy,Cornell Elaine,Crandall Carolyn,Crapo James,Curtis Jeffrey,Custer Brian,Damcott Coleen,Darbar Dawood,David Sean,Davis Colleen,Daya Michelle,de Andrade Mariza,Fuentes Lisa de las,DeBaun Michael,Deka Ranjan,DeMeo Dawn,Devine Scott,Dinh Huyen,Doddapaneni Harsha,Duan Qing,Dugan-Perez Shannon,Durda Jon Peter,Dutcher Susan K.,Eaton Charles,Ekunwe Lynette,El Boueiz Adel,Ellinor Patrick,Emery Leslie,Erzurum Serpil,Farber Charles,Farek Jesse,Fingerlin Tasha,Flickinger Matthew,Fornage Myriam,Frazar Chris,Fu Mao,Fullerton Stephanie M.,Fulton Lucinda,Gabriel Stacey,Gan Weiniu,Gao Shanshan,Gao Yan,Gass Margery,Geiger Heather,Gelb Bruce,Geraci Mark,Germer Soren,Gerszten Robert,Ghosh Auyon,Gibbs Richard,Gignoux Chris,Gladwin Mark,Glahn David,Gogarten Stephanie,Gong Da-Wei,Graw Sharon,Gray Kathryn J.,Grine Daniel,Gross Colin,Gu C. Charles,Guan Yue,Gupta Namrata,Hall Michael,Han Yi,Hanly Patrick,Harris Daniel,Hawley Nicola L.,He Jiang,Heavner Ben,Heckbert Susan,Hernandez Ryan,Herrington David,Hersh Craig,Hidalgo Bertha,Hixson James,Hobbs Brian,Hokanson John,Hong Elliott,Hoth Karin,Hsiung Chao,Hu Jianhong,Hung Yi-Jen,Huston Haley,Hwu Chii Min,Irvin Marguerite Ryan,Jackson Rebecca,Jain Deepti,Jaquish Cashell,Johnsen Jill,Johnson Andrew,Johnson Craig,Johnston Rich,Jones Kimberly,Kang Hyun Min,Kaplan Robert,Kardia Sharon,Kelly Shannon,Kenny Eimear,Kessler Michael,Khan Alyna,Khan Ziad,Kim Wonji,Kimoff John,Kinney Greg,Konkle Barbara,Kramer Holly,Lange Christoph,Lange Ethan,Laurie Cathy,Laurie Cecelia,LeBoff Meryl,Lee Jiwon,Lee Sandra,Lee Wen-Jane,LeFaive Jonathon,Levine David,Dan Levy ,Lewis Joshua,Li Xiaohui,Li Yun,Lin Henry,Lin Honghuang,Liu Simin,Liu Yongmei,Liu Yu,Loos Ruth J. F.,Lubitz Steven,Lunetta Kathryn,Luo James,Magalang Ulysses,Mahaney Michael,Make Barry,Manson JoAnn,Marton Melissa,Mathai Susan,May Susanne,McArdle Patrick,McDonald Merry-Lynn,McFarland Sean,McGoldrick Daniel,McHugh Caitlin,McNeil Becky,Mei Hao,Menon Vipin,Mestroni Luisa,Metcalf Ginger,Meyers Deborah A.,Mignot Emmanuel,Mikulla Julie,Min Nancy,Minear Mollie,Minster Ryan L.,Moll Matt,Momin Zeineen,Montgomery Courtney,Muzny Donna,Mychaleckyj Josyf C.,Nadkarni Girish,Naik Rakhi,Nekhai Sergei,Nelson Sarah C.,Neltner Bonnie,Nessner Caitlin,Nickerson Deborah,Nkechinyere Osuji,North Kari,O’Connor Tim,Ochs-Balcom Heather,Okwuonu Geoffrey,Pack Allan,Paik David T.,Pankow James,Papanicolaou George,Parker Cora,Peralta Juan Manuel,Perez Marco,Perry James,Peters Ulrike,Phillips Lawrence S.,Pleiness Jacob,Pollin Toni,Post Wendy,Becker Julia Powers,Boorgula Meher Preethi,Preuss Michael,Qasba Pankaj,Qiao Dandi,Qin Zhaohui,Rafaels Nicholas,Rajendran Mahitha,Rao D. C.,Rasmussen-Torvik Laura,Ratan Aakrosh,Reed Robert,Reeves Catherine,Regan Elizabeth,Robillard Rebecca,Robine Nicolas,Roden Dan,Roselli Carolina,Ruczinski Ingo,Runnels Alexi,Russell Pamela,Ruuska Sarah,Ryan Kathleen,Sabino Ester Cerdeira,Saleheen Danish,Salimi Shabnam,Salvi Sejal,Salzberg Steven,Sandow Kevin,Sankaran Vijay G.,Santibanez Jireh,Schwander Karen,Schwartz David,Sciurba Frank,Seidman Christine,Seidman Jonathan,Sériès Frédéric,Sheehan Vivien,Sherman Stephanie L.,Shetty Amol,Shetty Aniket,Sheu Wayne Hui-Heng,Shoemaker M. Benjamin,Silver Brian,Silverman Edwin,Skomro Robert,Smith Albert Vernon,Smith Josh,Smith Nicholas,Smith Tanja,Smoller Sylvia,Snively Beverly,Snyder Michael,Sofer Tamar,Sotoodehnia Nona,Stilp Adrienne M.,Storm Garrett,Streeten Elizabeth,Su Jessica Lasky,Sung Yun Ju,Sylvia Jody,Szpiro Adam,Taliun Daniel,Tang Hua,Taub Margaret,Taylor Matthew,Taylor Simeon,Telen Marilyn,Thornton Timothy A.,Threlkeld Machiko,Tinker Lesley,Tirschwell David,Tishkoff Sarah,Tiwari Hemant,Tong Catherine,Tracy Russell,Tsai Michael,Vaidya Dhananjay,Van Den Berg David,VandeHaar Peter,Vrieze Scott,Walker Tarik,Wallace Robert,Walts Avram,Wang Fei Fei,Wang Heming,Wang Jiongming,Watson Karol,Watt Jennifer,Weinstock Joshua,Weir Bruce,Weiss Scott T.,Weng Lu-Chen,Wessel Jennifer,Williams Kayleen,Williams L. Keoki,Wilson Carla,Winterkorn Lara,Wong Quenna,Wu Joseph,Xu Huichun,Yang Ivana,Yu Ketian,Zekavat Seyedeh Maryam,Zhang Yingze,Zhao Snow Xueyan,Zhu Xiaofeng,Ziv Elad,Zody Michael,Zoellner Sebastian,Atkinson Elizabeth,Ballantyne Christie,Bao Wei,Bhattacharya Romit,Bielak Larry,Bis Joshua,Bodea Corneliu,Brody Jennifer,Cade Brian,Calvo Sarah,Carlson Jenna,Chang I-Shou,Cho So Mi,de Vries Paul,Diallo Ana F.,Do Ron,Dron Jacqueline,Elliott Amanda,Finucane Hilary,Floyd Caitlin,Ganna Andrea,Gong Dawei,Graham Sarah,Haas Mary,Haring Bernhard,Heemann Scott,Himes Blanca,Jarvik Gail,Jiang Jicai,Joehanes Roby,Joseph Paule Valery,Jun Goo,Kalyani Rita,Kanai Masahiro,Kathiresan Sekar,Khera Amit,Khetarpal Sumeet,Klarin Derek,Koyama Satoshi,Kral Brian,Lange Leslie,Lemaitre Rozenn,Li Changwei,Lu Yingchang,Martin Lisa,Mathias Rasika,Mathur Ravi,McGarvey Stephen,McLenithan John,Miller Amy,Mootha Vamsi,Moran Andrew,Nakao Tetsushi,O’Connell Jeff,O’Donnell Christopher,Palmer Nicholette,Paruchuri Kaavya,Patel Aniruddh,Peloso Gina,Pettinger Mary,Peyser Patricia,Pirruccello James,Psaty Bruce,Reiner Alex,Rich Stephen,Rosenthal Samantha,Rotter Jerome,Smith Jennifer,Sunyaev Shamil R.,Surakka Ida,Sztalryd Carole,Trinder Mark,Uddin Md Mesbah,Urbut Sarah,Van Buren Eric,Verbanck Marie,Von Holle Ann,Wang Yuxuan,Wiggins Kerri,Wilkins John,Willer Cristen,Wilson James,Wolford Brooke,Yanek Lisa,Yu Zhi,Zaghloul Norann,Zhang Jingwen,Zhou Ying,Rotter Jerome I.,Willer Cristen J.^ORCID,Natarajan Pradeep,Peloso Gina M.^ORCID,Lin Xihong^ORCID, ,

Publisher

Springer Science and Business Media LLC

Subject

Cell Biology,Molecular Biology,Biochemistry,Biotechnology

Link

https://www.nature.com/articles/s41592-022-01640-x.pdf

Reference57 articles.

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