Evaluation of the Gibbs Free Energy Changes and Melting Temperatures of DNA/DNA Duplexes Using Hybridization Enthalpy Calculated by Molecular Dynamics Simulation-Reference-Cited by-同舟云学术

Evaluation of the Gibbs Free Energy Changes and Melting Temperatures of DNA/DNA Duplexes Using Hybridization Enthalpy Calculated by Molecular Dynamics Simulation

Published:2015-11-25 Issue:49 Volume:119 Page:15221-15234
ISSN:1520-6106
Container-title:The Journal of Physical Chemistry B
language:en
Short-container-title:J. Phys. Chem. B

Author:

Lomzov Alexander A.¹²,Vorobjev Yury N.¹²,Pyshnyi Dmitrii V.¹²

Affiliation:

1. Institute of Chemical Biology and Fundamental Medicine, Novosibirsk 630090, Russia

2. Novosibirsk State University, Novosibirsk 630090, Russia

Funder

Siberian Branch, Russian Academy of Sciences

Russian Foundation for Basic Research

Ministry of Education and Science of the Russian Federation

Russian Science Foundation

Publisher

American Chemical Society (ACS)

Subject

Materials Chemistry,Surfaces, Coatings and Films,Physical and Theoretical Chemistry

Link

http://pubs.acs.org/doi/pdf/10.1021/acs.jpcb.5b09645

Reference80 articles.

1. The Thermodynamics of DNA Structural Motifs

2. Sequence-Dependent Thermodynamic Parameters for Locked Nucleic Acid (LNA)−DNA Duplex Formation

3. Thermodynamic parameters for calculating the stability of complexes of bridged oligonucleotides

4. The unique structure of A-tracts and intrinsic DNA bending

5. The Transition between the B and Z Conformations of DNA Investigated by Targeted Molecular Dynamics Simulations with Explicit Solvation

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