Short-Range Imbalances in the AMBER Lennard-Jones Potential for (Deoxy)Ribose···Nucleobase Lone-Pair···π Contacts in Nucleic Acids-Reference-Cited by-同舟云学术

Short-Range Imbalances in the AMBER Lennard-Jones Potential for (Deoxy)Ribose···Nucleobase Lone-Pair···π Contacts in Nucleic Acids

Published:2021-11-05 Issue:11 Volume:61 Page:5644-5657
ISSN:1549-9596
Container-title:Journal of Chemical Information and Modeling
language:en
Short-container-title:J. Chem. Inf. Model.

Author:

Mráziková Klaudia¹²^ORCID,Šponer Jiří¹³^ORCID,Mlýnský Vojtěch¹³^ORCID,Auffinger Pascal⁴^ORCID,Kruse Holger¹^ORCID

Affiliation:

1. Institute of Biophysics of the Czech Academy of Sciences, Královopolská 135, 612 65 Brno, Czech Republic

2. National Centre for Biomolecular Research, Faculty of Science, Masaryk University, Kamenice 5, 625 00 Brno, Czech Republic

3. Regional Centre of Advanced Technologies and Materials, Czech Advanced Technology and Research Institute (CATRIN), Palacky University Olomouc, Šlechtitelů 241/27, 783 71 Olomouc-Holice, Czech Republic

4. Architecture and Reactivity of RNA, University of Strasbourg, Institute of Molecular and Cellular Biology of the CNRS, 67084 Strasbourg, France

Funder

European Regional Development Fund

Grantov?? Agentura ??esk?? Republiky

Publisher

American Chemical Society (ACS)

Subject

Library and Information Sciences,Computer Science Applications,General Chemical Engineering,General Chemistry

Link

https://pubs.acs.org/doi/pdf/10.1021/acs.jcim.1c01047

Reference119 articles.

1. Quantum Chemical Studies of Nucleic Acids: Can We Construct a Bridge to the RNA Structural Biology and Bioinformatics Communities?

2. Classification and energetics of the base-phosphate interactions in RNA

3. An introduction to recurrent nucleotide interactions in RNA

4. ‘Z-DNA like’ fragments in RNA: a recurring structural motif with implications for folding, RNA/protein recognition and immune response

5. Occurrence and stability of lone pair–π stacking interactions between ribose and nucleobases in functional RNAs

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