PyInteraph2 and PyInKnife2 to Analyze Networks in Protein Structural Ensembles
Author:
Affiliation:
1. Cancer Structural Biology, Danish Cancer Institute, Strandboulevarden 49, 2100 Copenhagen, Denmark
2. Cancer Systems Biology, Section of Bioinformatics, Department of Health and Technology, Technical University of Denmark, 2800 Lyngby, Denmark
Funder
Danmarks Grundforskningsfond
LEO Fondet
Novo Nordisk Fonden
Hartmann Fonden
Carlsbergfondet
Biotechnology-based Synthesis and Production
Publisher
American Chemical Society (ACS)
Subject
Library and Information Sciences,Computer Science Applications,General Chemical Engineering,General Chemistry
Link
https://pubs.acs.org/doi/pdf/10.1021/acs.jcim.3c00574
Reference98 articles.
1. The ensemble nature of allostery
2. Modulation of allosteric coupling by mutations: from protein dynamics and packing to altered native ensembles and function
3. On the perturbation nature of allostery: sites, mutations, and signal modulation
4. Ligand-Binding-Site Structure Shapes Allosteric Signal Transduction and the Evolution of Allostery in Protein Complexes
5. Conformational Changes and Free Energies in a Proline Isomerase
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