Influence of BII Backbone Substates on DNA Twist: A Unified View and Comparison of Simulation and Experiment for All 136 Distinct Tetranucleotide Sequences-Reference-Cited by-同舟云学术

Influence of BII Backbone Substates on DNA Twist: A Unified View and Comparison of Simulation and Experiment for All 136 Distinct Tetranucleotide Sequences

Published:2017-01-20 Issue:2 Volume:57 Page:275-287
ISSN:1549-9596
Container-title:Journal of Chemical Information and Modeling
language:en
Short-container-title:J. Chem. Inf. Model.

Author:

Zgarbová Marie¹,Jurečka Petr¹^ORCID,Lankaš Filip²,Cheatham Thomas E.³^ORCID,Šponer Jiří¹⁴,Otyepka Michal¹^ORCID

Affiliation:

1. Regional Centre of Advanced Technologies and Materials, Department of Physical Chemistry, Faculty of Science, Palacky University, 17 listopadu 12, 77146 Olomouc, Czech Republic

2. Laboratory of Informatics and Chemistry, University of Chemistry and Technology Prague, Technická 5, 16628 Prague, Czech Republic

3. Department of Medicinal Chemistry, University of Utah, 30 South 2000 East, Skaggs 105, Salt Lake City, Utah 84112, United States

4. Institute of Biophysics, Academy of Sciences of the Czech Republic, Královopolská 135, 61265 Brno, Czech Republic

Funder

Ministerstvo ?kolstv?, Ml?de?e a Telov?chovy

Grantov? Agentura Cesk? Republiky

Publisher

American Chemical Society (ACS)

Subject

Library and Information Sciences,Computer Science Applications,General Chemical Engineering,General Chemistry

Link

https://pubs.acs.org/doi/pdf/10.1021/acs.jcim.6b00621

Reference86 articles.

1. Definitions and nomenclature of nucleic acid structure parameters

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3. 3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures

4. Conformational analysis of nucleic acids revisited: Curves+

5. Kinematic model for B-DNA.

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