OPUS-Mut: Studying the Effect of Protein Mutation through Side-Chain Modeling-Reference-Cited by-同舟云学术

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OPUS-Mut: Studying the Effect of Protein Mutation through Side-Chain Modeling

Published:2023-02-22 Issue:5 Volume:19 Page:1629-1640
ISSN:1549-9618
Container-title:Journal of Chemical Theory and Computation
language:en
Short-container-title:J. Chem. Theory Comput.

Author:

Xu Gang¹²³,Wang Qinghua⁴,Ma Jianpeng¹²³^ORCID

Affiliation:

1. Multiscale Research Institute of Complex Systems, Fudan University, Shanghai 200433, China

2. Zhangjiang Fudan International Innovation Center, Fudan University, Shanghai 201210, China

3. Shanghai AI Laboratory, Shanghai 200030, China

4. Center for Biomolecular Innovation, Harcam Biomedicines, Shanghai 200131, China

Funder

Ministry of Science and Technology of the People's Republic of China

Science and Technology Commission of Shanghai Municipality

ZJLab

Publisher

American Chemical Society (ACS)

Subject

Physical and Theoretical Chemistry,Computer Science Applications

Link

https://pubs.acs.org/doi/pdf/10.1021/acs.jctc.2c00847

Reference61 articles.

1. Finding better protein engineering strategies

2. Quantitative analysis of residual folding and DNA binding in mutant p53 core domain: definition of mutant states for rescue in cancer therapy

3. Predicting changes in protein thermodynamic stability upon point mutation with deep 3D convolutional neural networks

4. mCSM: predicting the effects of mutations in proteins using graph-based signatures

5. Accurate prediction of enzyme mutant activity based on a multibody statistical potential

Cited by 7 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. OPUS-Design: Designing Protein Sequence from Backbone Structure with 3DCNN and Protein Language Model;2024-08-21

2. OPUS-BFactor: Predicting protein B-factor with sequence and structure information;2024-07-19

3. OPUS-Rota5: A highly accurate protein side-chain modeling method with 3D-Unet and RotaFormer;Structure;2024-07

4. Rheostatic contributions to protein stability can obscure a position's functional role;Protein Science;2024-06-19

5. PMSPcnn: Predicting protein stability changes upon single point mutations with convolutional neural network;Structure;2024-06

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