Computational Investigation of RNA CUG Repeats Responsible for Myotonic Dystrophy 1-Reference-Cited by-同舟云学术

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Computational Investigation of RNA CUG Repeats Responsible for Myotonic Dystrophy 1

Published:2015-09-08 Issue:10 Volume:11 Page:4943-4958
ISSN:1549-9618
Container-title:Journal of Chemical Theory and Computation
language:en
Short-container-title:J. Chem. Theory Comput.

Author:

Yildirim Ilyas¹²,Chakraborty Debayan²,Disney Matthew D.³,Wales David J.²,Schatz George C.¹

Affiliation:

1. Department of Chemistry, Northwestern University, Evanston, Illinois 60208, United States

2. Department of Chemistry, University of Cambridge, Cambridge, United Kingdom CB2 1EW

3. Department of Chemistry, The Scripps Research Institute, Jupiter, Florida 33458, United States

Funder

Division of Chemistry

European Research Council

National Cancer Institute

Cambridge Commonwealth, European and International Trust

National Institute of General Medical Sciences

Muscular Dystrophy Association

Engineering and Physical Sciences Research Council

Publisher

American Chemical Society (ACS)

Subject

Physical and Theoretical Chemistry,Computer Science Applications

Link

https://pubs.acs.org/doi/pdf/10.1021/acs.jctc.5b00728

Reference108 articles.

1. Structural Diversity of Triplet Repeat RNAs

2. Expanded CUG repeat RNAs form hairpins that activate the double-stranded RNA-dependent protein kinase PKR

3. Structure and folding dynamics of a DNA hairpin with a stabilising d(GNA) trinucleotide loop: influence of base pair mis-matches and point mutations on conformational equilibria

4. Structure of Even/Odd Trinucleotide Repeat Sequences Modulates Persistence of Non-B Conformations and Conversion to Duplex

5. Analysis of Strand Slippage in DNA Polymerase Expansions of CAG/CTG Triplet Repeats Associated with Neurodegenerative Disease

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1. NMR structures of small molecules bound to a model of a CUG RNA repeat expansion;Bioorganic & Medicinal Chemistry Letters;2024-10

2. NMR structures of small molecules bound to a model of an RNA CUG repeat expansion;2024-06-22

3. Prediction of 3D RNA Structures from Sequence Using Energy Landscapes of RNA Dimers: Application to RNA Tetraloops;Journal of Chemical Theory and Computation;2024-05-10

4. Structure and Dynamics of DNA and RNA Double Helices Formed by d(CTG), d(GTC), r(CUG), and r(GUC) Trinucleotide Repeats and Associated DNA–RNA Hybrids;The Journal of Physical Chemistry B;2023-09-08

5. Structural basis for water modulating RNA duplex formation in the CUG repeats of myotonic dystrophy type 1;Journal of Biological Chemistry;2023-07

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