Species ecology explains the spatial components of genetic diversity in tropical reef fishes

Author:

Donati Giulia Francesca Azzurra12ORCID,Zemp Niklaus3ORCID,Manel Stéphanie4ORCID,Poirier Maude12,Claverie Thomas56ORCID,Ferraton Franck7,Gaboriau Théo89ORCID,Govinden Rodney10ORCID,Hagen Oskar12ORCID,Ibrahim Shameel11,Mouillot David412ORCID,Leblond Julien13,Julius Pagu14ORCID,Velez Laure5ORCID,Zareer Irthisham11,Ziyad Adam15,Leprieur Fabien512ORCID,Albouy Camille16ORCID,Pellissier Loïc12ORCID

Affiliation:

1. Landscape Ecology, Institute of Terrestrial Ecosystems, ETH Zürich, CH8092 Zürich, Switzerland

2. Swiss Federal Institute for Forest, Snow and Landscape Research WSL, CH8903 Birmensdorf, Switzerland

3. Genetic Diversity Centre (GDC), ETH Zürich, CH8092 Zürich, Switzerland

4. CEFE, Univ Montpellier, CNRS EPHE-PSL University, IRD, Montpellier, France

5. MARBEC, Univ Montpellier, CNRS, IFREMER, IRD, Montpellier 34095, France

6. Centre Universitaire de formation et de recherche de Mayotte, Dembeni 97660, France

7. Centre National de la Recherche Scientifique (CNRS), UMR 248 MARBEC, Montpellier, France

8. Department of Computational Biology, University of Lausanne, 1015 Lausanne, Switzerland

9. Swiss Institute of Bioinformatics, Quartier Sorge, 1015 Lausanne, Switzerland

10. Seychelles Fishing Authority, Mahe, Seychelles

11. Maldives Whale Shark Research Programme, Popeshead Court Offices, Peter Lane, York, Yorkshire Y01 8SU, UK

12. Institut Universitaire de France, Paris, France

13. Wildlife Conservation Society, Madagascar Program, Antananarivo, Madagascar

14. Mafia Island Marine Park, Mafia, Tanzania

15. Ministry of Fisheries and Agriculture, Malé, Republic of Maldives

16. IFREMER, Unité Écologie et Modèles pour l'Halieutique, rue de l'Ile d'Yeu, BP21105, 44311 Nantes cedex 3, France

Abstract

Generating genomic data for 19 tropical reef fish species of the Western Indian Ocean, we investigate how species ecology influences genetic diversity patterns from local to regional scales. We distinguish between the α , β and γ components of genetic diversity, which we subsequently link to six ecological traits. We find that the α and γ components of genetic diversity are strongly correlated so that species with a high total regional genetic diversity display systematically high local diversity. The α and γ diversity components are negatively associated with species abundance recorded using underwater visual surveys and positively associated with body size. Pelagic larval duration is found to be negatively related to genetic β diversity supporting its role as a dispersal trait in marine fishes. Deviation from the neutral theory of molecular evolution motivates further effort to understand the processes shaping genetic diversity and ultimately the diversification of the exceptional diversity of tropical reef fishes.

Funder

Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung

Agence Nationale de la Recherche

Publisher

The Royal Society

Subject

General Agricultural and Biological Sciences,General Environmental Science,General Immunology and Microbiology,General Biochemistry, Genetics and Molecular Biology,General Medicine

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