DDBJ Data Analysis Challenge: a machine learning competition to predict Arabidopsis chromatin feature annotations from DNA sequences

Author:

Kaminuma Eli1,Baba Yukino2,Mochizuki Masahiro3,Matsumoto Hirotaka4,Ozaki Haruka4,Okayama Toshitsugu5,Kato Takuya6,Oki Shinya7,Fujisawa Takatomo1,Nakamura Yasukazu1,Arita Masanori1,Ogasawara Osamu1,Kashima Hisashi2,Takagi Toshihisa18

Affiliation:

1. Center for Information Biology, National Institute of Genetics

2. Graduate School of Informatics, Kyoto University

3. IMSBIO Co., Ltd.

4. Laboratory for Bioinformatics Research, RIKEN Center for Biosystems Dynamics Research

5. BITS Co., Ltd.

6. Graduate School of Information Science and Technology, The University of Tokyo

7. Graduate School of Medical Sciences, Kyushu University

8. Graduate School of Science, The University of Tokyo

Publisher

Genetics Society of Japan

Subject

Genetics,Molecular Biology,General Medicine

Reference36 articles.

1. Abadi, M., Agarwal, A., Barham, P., Brevdo, E., Chen, Z., Citro, C., Corrado, G. S., Davis, A., Dean, J., Devin, M., et al. (2015) TensorFlow: Large-scale machine learning on heterogeneous distributed systems. Software available from tensorflow.org. arXiv:1603.04467.

2. Baba, Y., Takase, T., Atarashi, K., Oyama, S., and Kashima, H. (2018) Data analysis competition platform for educational purposes: lessons learned and future challenges. Proceedings of the 8th Symposium on Educational Advances in Artificial Intelligence 2018 (EAAI-18), 7887–7892.

3. Bender, E. (2016) Challenges: crowdsourced solutions. Nature 533, S62–S64.

4. Bernstein, B. E., Stamatoyannopoulos, J. A., Costello, J. F., Ren, B., Milosavljevic, A., Meissner, A., Kellis, M., Marra, M. A., Beaudet, A. L., Ecker, J. R., et al. (2010) The NIH roadmap epigenomics mapping consortium. Nat. Biotechnol. 28, 1045–1048.

5. Bochare, A., Gangopadhyay, A., Yesha, Y., Joshi, A., Yesha, Y., Brady, M., Grasso, M. A., and Rishe, N. (2014) Integrating domain knowledge in supervised machine learning to assess the risk of breast cancer. Int. J. Med. Eng. Inform. 6, 87–99.

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