Opportunities and challenges in sharing and reusing genomic interval data-Reference-Cited by-同舟云学术

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Opportunities and challenges in sharing and reusing genomic interval data

Published:2023-03-20 Issue: Volume:14 Page:
ISSN:1664-8021
Container-title:Frontiers in Genetics
language:
Short-container-title:Front. Genet.

Author:

Xue Bingjie,Khoroshevskyi Oleksandr,Gomez R. Ariel,Sheffield Nathan C.

Funder

National Institute of General Medical Sciences

National Human Genome Research Institute

Publisher

Frontiers Media SA

Subject

Genetics (clinical),Genetics,Molecular Medicine

Reference21 articles.

1. DeepBlue epigenomic data server: Programmatic data retrieval and analysis of epigenome region sets;Albrecht;Nucleic Acids Res.,2016

2. NCBI GEO: Archive for functional genomics data sets–update;Barrett;Nucleic Acids Res.,2013

3. Pysradb: A python package to query next-generation sequencing metadata and data from NCBI sequence read archive;Choudhary;F1000Research.,2019

4. GEOquery: A bridge between the gene expression omnibus (GEO) and BioConductor;Davis;Bioinformatics,2007

5. An integrated encyclopedia of DNA elements in the human genome;Nature,2012

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