Distribution of Antibiotic Resistance Genes and Their Association with Microbes in Wastewater Treatment Plants: A Metagenomics Analysis

Abstract

The extensive use of antibiotics has resulted in the generation and accumulation of antibiotic resistance genes (ARGs) in the environment, and domestic wastewater is one of the main reservoirs of ARGs and resistant bacteria. In this study, Illumina high-throughput sequencing and network analysis were used to study the microbial community characteristics, ARGs’ occurrence status, and resistance mechanism in the influent and effluent of a domestic sewage treatment plant in Changchun, China. A total of 29 phyla were found in the influent and effluent, including 23 bacterial phyla, 3 archaeal phyla, and 3 eukaryotic phyla. In total, 112 ARG subtypes were detected in the samples, and the dominant ARG subtypes were Erm(35) and tet(W/N/W). In this study, ARGs related to tetracycline and macrolide accounted for a high proportion, and the resistance mechanisms of ARGs detected in the samples were mainly antibiotic inactivation and antibiotic efflux pumps. Co-occurrence maps of ARGs and microbes demonstrated by network analysis indicated that the resistance genes kdpE, GES-5, and tetX may easily bind to microbes, potentially making them antibiotic-resistant bacteria. Fifty-seven bacteria in the genera Cupriavidus, Escherichia, and Collinsell are potential hosts of multiple ARGs. The findings can increase our understanding of the distribution of ARGs and their association with microbes in wastewater treatment plants, and also provide a research foundation for controlling the diffusion of ARGs in the environment.