Guiding Drug Repositioning for Cancers Based on Drug Similarity Networks

Author:

Qin Shimei1,Li Wan1ORCID,Yu Hongzheng1,Xu Manyi1,Li Chao1,Fu Lei1,Sun Shibin1,He Yuehan1,Lv Junjie1,He Weiming2,Chen Lina1

Affiliation:

1. College of Bioinformatics Science and Technology, Harbin Medical University, Harbin 150081, China

2. Institute of Opto-Electronics, Harbin Institute of Technology, Harbin 150001, China

Abstract

Drug repositioning aims to discover novel clinical benefits of existing drugs, is an effective way to develop drugs for complex diseases such as cancer and may facilitate the process of traditional drug development. Meanwhile, network-based computational biology approaches, which allow the integration of information from different aspects to understand the relationships between biomolecules, has been successfully applied to drug repurposing. In this work, we developed a new strategy for network-based drug repositioning against cancer. Combining the mechanism of action and clinical efficacy of the drugs, a cancer-related drug similarity network was constructed, and the correlation score of each drug with a specific cancer was quantified. The top 5% of scoring drugs were reviewed for stability and druggable potential to identify potential repositionable drugs. Of the 11 potentially repurposable drugs for non-small cell lung cancer (NSCLC), 10 were confirmed by clinical trial articles and databases. The targets of these drugs were significantly enriched in cancer-related pathways and significantly associated with the prognosis of NSCLC. In light of the successful application of our approach to colorectal cancer as well, it provides an effective clue and valuable perspective for drug repurposing in cancer.

Funder

National Natural Science Foundation of China

Natural Science Foundation of Heilongjiang Province

Heilongjiang Postdoctoral Funds for Scientific Research Initiation

Publisher

MDPI AG

Subject

Inorganic Chemistry,Organic Chemistry,Physical and Theoretical Chemistry,Computer Science Applications,Spectroscopy,Molecular Biology,General Medicine,Catalysis

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