The past, present, and future of the brain imaging data structure (BIDS)

Author:

Poldrack Russell A.1,Markiewicz Christopher J.1,Appelhoff Stefan2,Ashar Yoni K.3,Auer Tibor45,Baillet Sylvain6,Bansal Shashank7,Beltrachini Leandro8,Benar Christian G.9,Bertazzoli Giacomo1011121314,Bhogawar Suyash15,Blair Ross W.1,Bortoletto Marta10,Boudreau Mathieu16,Brooks Teon L.1,Calhoun Vince D.17,Castelli Filippo Maria1819,Clement Patricia2021,Cohen Alexander L.22,Cohen-Adad Julien16,D’Ambrosio Sasha2324,de Hollander Gilles25,de la Iglesia-Vayá María26,de la Vega Alejandro27,Delorme Arnaud28,Devinsky Orrin29,Draschkow Dejan30,Duff Eugene Paul31,DuPre Elizabeth1,Earl Eric32,Esteban Oscar33,Feingold Franklin W.1,Flandin Guillaume34,Galassi Anthony32,Gallitto Giuseppe3536,Ganz Melanie3738,Gau Rémi39,Gholam James40,Ghosh Satrajit S.41,Giacomel Alessio42,Gillman Ashley G.43,Gleeson Padraig44,Gramfort Alexandre45,Guay Samuel46,Guidali Giacomo47,Halchenko Yaroslav O.48,Handwerker Daniel A.32,Hardcastle Nell1,Herholz Peer39,Hermes Dora49,Honey Christopher J.50,Innis Robert B.32,Ioanas Horea-Ioan48,Jahn Andrew51,Karakuzu Agah16,Keator David B.525354,Kiar Gregory55,Kincses Balint3536,Laird Angela R.56,Lau Jonathan C.57,Lazari Alberto58,Legarreta Jon Haitz59,Li Adam60,Li Xiangrui61,Love Bradley C.62,Lu Hanzhang63,Marcantoni Eleonora64,Maumet Camille65,Mazzamuto Giacomo66,Meisler Steven L.67,Mikkelsen Mark68,Mutsaerts Henk6970,Nichols Thomas E.71,Nikolaidis Aki72,Nilsonne Gustav7374,Niso Guiomar75,Norgaard Martin3237,Okell Thomas W.58,Oostenveld Robert7677,Ort Eduard78,Park Patrick J.79,Pawlik Mateusz80,Pernet Cyril R.38,Pestilli Franco27,Petr Jan81,Phillips Christophe82,Poline Jean-Baptiste39,Pollonini Luca8384,Raamana Pradeep Reddy85,Ritter Petra8687888990,Rizzo Gaia9192,Robbins Kay A.93,Rockhill Alexander P.94,Rogers Christine95,Rokem Ariel96,Rorden Chris97,Routier Alexandre98,Saborit-Torres Jose Manuel26,Salo Taylor99,Schirner Michael8687888990,Smith Robert E.100101,Spisak Tamas35102,Sprenger Julia103,Swann Nicole C.104,Szinte Martin103,Takerkart Sylvain103,Thirion Bertrand45,Thomas Adam G.32,Torabian Sajjad105,Varoquaux Gael106,Voytek Bradley107,Welzel Julius108,Wilson Martin109,Yarkoni Tal110,Gorgolewski Krzysztof J.1

Affiliation:

1. Department of Psychology, Stanford University, Stanford, CA, United States

2. Max Planck Institute for Human Development, Berlin, Germany

3. University of Colorado Anschutz Medical Campus, Aurora, CO, United States

4. School of Psychology, University of Surrey, Guildford, United Kingdom

5. Artificial Intelligence and Informatics Group, Rosalind Franklin Institute, Harwell Campus, Didcot, United Kingdom

6. McConnell Brain Imaging Centre, Montréal Neurological Institute, McGill University, Montréal, Canada

7. Department of Bioengineering, University of California, San Diego, La Jolla, CA, United States

8. Cardiff University Brain Research Imaging Centre (CUBRIC), School of Physics and Astronomy, Cardiff University, Wales, United Kingdom

9. Aix Marseille Université, INSERM, INS, Inst Neurosci Syst, Marseille, France

10. Neurophysiology Lab, IRCCS Istituto Centro San Giovanni di Dio Fatebenefratelli, Brescia, Italy

11. Center for Mind/Brain Sciences - CIMeC, University of Trento, Rovereto, TN, Italy

12. Brigham and Women’s Hospital, Boston, MA, United States

13. Massachusetts General Hospital, Boston, MA, United States

14. Harvard Medical School, Boston, MA, United States

15. Rackspace Technology, San Antonio, TX, United States

16. NeuroPoly Lab, Polytechnique Montréal, Montréal, Quebec, Canada

17. Tri-institutional Center for Translational Research in Neuroimaging and Data Science (TReNDS), Georgia State, Georgia Tech, Emory, Atlanta, GA, United States

18. European Laboratory for Non-Linear Spectroscopy (LENS), University of Florence, Sesto Fiorentino, Italy

19. Bioretics srl, Cesena, Italy

20. Department of Medical Imaging, Ghent University Hospital, Ghent, Belgium

21. Department of Diagnostic Sciences, Ghent University, Ghent, Belgium

22. Department of Neurology, Boston Children’s Hospital, Boston, MA, United States

23. Department of Health Sciences, Università degli Studi di Milano, Milan, Italy

24. Department of Clinical and Experimental Epilepsy, University College London, London, United Kingdom

25. Zurich Center for Neuroeconomics, Department of Economics, University of Zurich, Zurich, Switzerland

26. Center for Biomedical Research in Mental Health Network (CIBERSAM), UMIB-FISABIO, Valencia, Spain

27. The University of Texas at Austin, Austin, TX, United States

28. SCCN, University of California, San Diego, La Jolla, CA, United States

29. Department of Neurology, NYU Langone Medical Center, New York, NY, United States

30. Department of Experimental Psychology, University of Oxford, Oxford, United Kingdom

31. UK Dementia Research Institute, Department of Brain Sciences, Imperial College London, London, United Kingdom

32. Intramural Research Program, National Institute of Mental Health, Bethesda, MD, United States

33. Department of Radiology, Lausanne University Hospital and University of Lausanne, Lausanne, Switzerland

34. Wellcome Centre for Human Neuroimaging, University College London, London, England, United Kingdom

35. Center for Translational Neuro- and Behavioral Sciences, University Medicine Essen, Essen, Germany

36. Department of Neurology, University Medicine Essen, Essen, Germany

37. Department of Computer Science, University of Copenhagen, Copenhagen, Denmark

38. Neurobiology Research Unit, Copenhagen University Hospital, Copenhagen, Denmark

39. Neuro Data Science ORIGAMI Laboratory, McConnell Brain Imaging Centre, Faculty of Medicine, McGill University, Montréal, Canada

40. Cardiff University Brain Research Imaging Centre (CUBRIC), School of Psychology, Cardiff University, Wales, United Kingdom

41. Massachusetts Institute of Technology, Cambridge, MA, United States

42. Department of Neuroimaging, Institute of Psychiatry, Psychology and Neuroscience, King’s College London, London, England, United Kingdom

43. The Australian e-Health Research Centre, Commonwealth Scientific and Industrial Research Organisation, Townsville, Queensland, Australia

44. Department of Neuroscience, Physiology and Pharmacology, University College London, London, England, United Kingdom

45. Inria, CEA, Université Paris-Saclay, Palaiseau, France

46. Université de Montréal, Montréal, QC, Canada

47. Department of Psychology & NeuroMI - Milan Centre for Neuroscience, University of Milano-Bicocca, Milan, Italy

48. Center for Open Neuroscience, Department of Psychological and Brain Sciences, Dartmouth College, NH, United States

49. Department of Physiology and Biomedical Engineering, Mayo Clinic, Rochester, MN, United States

50. Department of Psychological & Brain Sciences, Johns Hopkins University, Baltimore, MD, United States

51. Functional MRI Laboratory, University of Michigan, Ann Arbor, MI, United States

52. Change Your Brain Change Your Life Foundation, Costa Mesa, CA, United States

53. Amen Clinics, Costa Mesa, CA, United States

54. Department of Psychiatry and Human Behavior, School of Medicine, University of California, Irvine, CA, United States

55. Center for Data Analytics, Innovation, and Rigor, Child Mind Institute, New York, NY, United States

56. Department of Physics, Florida International University, Miami, FL, United States

57. Department of Clinical Neurological Sciences, Western University, London, Ontario, Canada

58. Wellcome Centre for Integrative Neuroimaging, FMRIB, Nuffield Department of Clinical Neurosciences, University of Oxford, Oxford, United Kingdom

59. Department of Radiology, Brigham and Women’s Hospital, Mass General Brigham/Harvard Medical School, Boston, MA, United States

60. Columbia University, New York, NY, United States

61. Center for Cognitive and Behavioral Brain Imaging, The Ohio State University, Columbus, OH, United States

62. University College London, London, United Kingdom

63. Johns Hopkins University School of Medicine, Baltimore, MD, United States

64. School for Psychology and Neuroscience and Centre for Cognitive Neuroimaging, University of Glasgow, Glasgow, Scotland

65. Inria, Univ Rennes, CNRS, Inserm, IRISA UMR 6074, Empenn ERL U 1228, Rennes, France

66. National Research Council - National Institute of Optics (CNR-INO), Florence, Italy

67. Program in Speech and Hearing Bioscience and Technology, Harvard University, Cambridge, MA, United States

68. Department of Radiology, Weill Cornell Medicine, New York, NY, United States

69. Radiology and Nuclear Medicine, Vrije Universiteit Amsterdam, Amsterdam UMC location VUmc, Amsterdam, The Netherlands

70. Amsterdam Neuroscience, Brain Imaging, Amsterdam, The Netherlands

71. Big Data Institute, Li Ka Shing Centre for Health Information and Discovery, Nuffield Department of Population Health, University of Oxford, Oxford, United Kingdom

72. Center for the Developing Brain, Child Mind Institute, New York, NY, United States

73. Department of Clinical Neuroscience, Karolinska Institutet, Stockholm, Sweden

74. Swedish National Data Service, Gothenburg University, Gothenburg, Sweden

75. Instituto Cajal, CSIC, Madrid, Spain

76. Donders Institute for Brain, Cognition and Behaviour, Radboud University Nijmegen, Nijmegen, The Netherlands

77. NatMEG, Karolinska Institutet, Stockholm, Sweden

78. Department of Biological Psychology of Decision Making, Heinrich Heine University, Düsseldorf, Germany

79. Western University, London, Ontario, Canada

80. Paris-Lodron-University of Salzburg, Department of Psychology, Centre for Cognitive Neuroscience, Salzburg, Austria

81. Helmholtz-Zentrum Dresden-Rossendorf, Institute of Radiopharmaceutical Cancer Research, Dresden, Germany

82. GIGA CRC in vivo imaging, Liège University, Liege, Belgium

83. Department of Engineering Technology, University of Houston, Houston, TX, United States

84. Basque Center on Cognition, Brain and Language, Donostia-San Sebastián, Spain

85. University of Pittsburgh, Pittsburgh, PA, United States

86. Berlin Institute of Health at Charité, Universitätsmedizin Berlin, Berlin, Germany

87. Department of Neurology with Experimental Neurology, Charité, Universitätsmedizin Berlin, Corporate member of Freie Universität Berlin and Humboldt Universität zu Berlin, Berlin, Germany

88. Bernstein Focus State Dependencies of Learning and Bernstein Center for Computational Neuroscience, Berlin, Germany

89. Einstein Center for Neuroscience Berlin, Berlin, Germany

90. Einstein Center Digital Future, Berlin, Germany

91. Invicro, London, United Kingdom

92. Division of Brain Sciences, Imperial College London, London, United Kingdom

93. Department of Computer Science, University of Texas at San Antonio, San Antonio, TX, United States

94. Department of Neurosurgery, Oregon Health & Science University, Portland, OR, United States

95. McGill Centre for Integrative Neuroscience (MCIN), Montréal Neurological Institute, McGill University, Montréal, QC, Canada

96. Department of Psychology and eScience Institute, University of Washington, Seattle, WA, United States

97. Department of Psychology, University of South Carolina, Columbia, SC, United States

98. Inria, Institut du Cerveau - Paris Brain Institute, Paris, France

99. Lifespan Informatics and Neuroimaging Center (PennLINC), Department of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Lifespan Brain Institute (LiBI) of Penn Medicine and Children’s Hospital of Philadelphia (CHOP), Philadelphia, PA, United States

100. The Florey Institute of Neuroscience and Mental Health, Heidelberg, Victoria, Australia

101. The Florey Department of Neuroscience and Mental Heath, The University of Melbourne, Parkville, Victoria, Australia

102. Institute for Diagnostic and Interventional Radiology and Neuroradiology, University Medicine Essen, Essen, Germany

103. Institut de Neurosciences de la Timone (INT), UMR7289, CNRS, Aix-Marseille Université, Marseille, France

104. Department of Human Physiology, University of Oregon, Eugene, OR, United States

105. University of California, Irvine, CA, United States

106. Inria, Université Paris Saclay, Saclay, France

107. Department of Cognitive Science, Halıcıoğlu Data Science Institute, and Neurosciences Graduate Program, University of California, San Diego, La Jolla, CA, United States

108. Kiel University, Kiel, Germany

109. Centre for Human Brain Health and School of Psychology, University of Birmingham, Birmingham, United Kingdom

110. Google X. Mountain View, CA, United States

Abstract

Abstract The Brain Imaging Data Structure (BIDS) is a community-driven standard for the organization of data and metadata from a growing range of neuroscience modalities. This paper is meant as a history of how the standard has developed and grown over time. We outline the principles behind the project, the mechanisms by which it has been extended, and some of the challenges being addressed as it evolves. We also discuss the lessons learned through the project, with the aim of enabling researchers in other domains to learn from the success of BIDS.

Publisher

MIT Press

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