Comparative transcriptomic analysis reveals differences inMADS‐boxgenes of different hypericum in Changbai Mountains
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Published:2023-06
Issue:6
Volume:13
Page:
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ISSN:2045-7758
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Container-title:Ecology and Evolution
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language:en
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Short-container-title:Ecology and Evolution
Author:
Yunrui Xia1ORCID,
Rui Song1,
Xing Yang1,
Zhe Zhao1,
Keqin Zhang2,
Nanyi Zhang1
Affiliation:
1. Jilin Provincial Key Laboratory of Tree and Grass Genetics and Breeding, College of Forestry and Grassland Science Jilin Agricultural University Changchun Jilin Province China
2. Jilin Agricultural Science and Technology University Jilin Jilin Province China
Abstract
AbstractTo explore the differences between the hypericum in the Changbai Mountains, we carried out a transcriptome analysis of two common hypericums in the area, which wasHypericum attenuatumChoisy andHypericum longistylumOliv. We screened theMADS‐boxgenes to analyze divergence time and evolutionary selection expression, and determine their expression levels. The results showed that we detected 9287 differentially expressed genes in the two species, of which shared 6044 genes by the two species. Analysis of the selectedMADSgenes revealed that the species was in an environment adapted to its natural evolution. The divergence time estimation showed that the segregation of these genes in the two species was related to the changes of external environment and genome replication events. The results of relative expression showed that the later flowering period ofHypericum attenuatumChoisy was related to the higher expression of theSVP (SHORT VEGETATIVE PHASE)and theAGL12 (AGAMOUS LIKE 12), while the lower expression of theFUL (FRUITFULL).
Funder
National Natural Science Foundation of China
Subject
Nature and Landscape Conservation,Ecology,Ecology, Evolution, Behavior and Systematics
Reference62 articles.
1. And then there were many: MADS goes genomic
2. Genetic interactions among floral homeotic genes of Arabidopsis
3. Comparison of different extraction methods of Total RNA from Hypericum attenuatum leaves;Chang G.;Guizhou Agricultural Sciences,2014
4. Estimating the duration of daylight in a given time of the year depending on the latitude of the location;Chiruta C.;Research Journal of Agricultural Science,2010
5. Taxonomy and chemotaxonomy of the genus Hypericum;Crockett L.;Medicinal and Aromatic Plant Science and Biotechnology,2011