NDT‐C11 as a Viable Novel Detergent for Single Particle Cryo‐EM

Author:

Jiko Chimari1,Li Jiannan2,Moon Youngsun3,Tanaka Yoshito4,Gopalasingam Chai C.5ORCID,Shigematsu Hideki6ORCID,Chae Pil Seok3ORCID,Kurisu Genji2ORCID,Gerle Christoph5ORCID

Affiliation:

1. Institute for Integrated Radiation and Nuclear Science Kyoto University Kumatori, Osaka 590-0494 Japan

2. Institute for Protein Research Osaka University Suita, Osaka 565-0871 Japan

3. Department of Bionano Engineering Hanyang University Ansan 155-88 South Korea

4. Graduate School of Life Science University of Hyogo Kamigori 678-1297 Japan

5. Life Science Research Infrastructure Group RIKEN SPring-8 Center Sayo 679-5148 Japan

6. Structural Biology Division Japan Synchrotron Radiation Research Institute SPring-8 Sayo 679-5148 Japan

Abstract

AbstractSingle particle cryo electron microscopy (cryo‐EM) is now the major method for the determination of integral membrane protein structure. For the success of a given project the type of membrane mimetic used for extraction from the native cell membrane, purification to homogeneity and finally cryo‐grid vitrification is crucial. Although small molecule amphiphiles – detergents – are the most widely used membrane mimetic, specific tailoring of detergent structure for single particle cryo‐EM is rare and the demand for effective detergents not satisfied. Here, we compare the popular detergent lauryl maltose‐neopentyl glycol (LMNG) with the novel detergent neopentyl glycol‐derived triglucoside‐C11 (NDT‐C11) in its behavior as free detergent and when bound to two types of multisubunit membrane protein complexes – cyanobacterial photosystem I (PSI) and mammalian F‐ATP synthase. We conclude that NDT‐C11 has high potential to become a very useful detergent for single particle cryo‐EM of integral membrane proteins.

Funder

Japan Agency for Medical Research and Development

Japan Science and Technology Agency

Publisher

Wiley

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