Structure-based prediction of DNA-binding sites on proteins Using the empirical preference of electrostatic potential and the shape of molecular surfaces-Reference-Cited by-同舟云学术

Structure-based prediction of DNA-binding sites on proteins Using the empirical preference of electrostatic potential and the shape of molecular surfaces

Published:2004-04-01 Issue:4 Volume:55 Page:885-894
ISSN:0887-3585
Container-title:Proteins: Structure, Function, and Bioinformatics
language:en
Short-container-title:Proteins

Author:

Tsuchiya Yuko,Kinoshita Kengo,Nakamura Haruki

Publisher

Wiley

Subject

Molecular Biology,Biochemistry,Structural Biology

Reference50 articles.

1. Determination of protein function, evolution and interactions by structural genomics;Teichmann;Curr Opin Struct Biol,2001

2. From structure to function: approaches and limitations;Thornton;Nat Struct Biol,2000

3. Prediction of catalytic residues in enzymes based on known tertiary structure, stability profile, and sequence conservation;Ota;J Mol Biol,2003

4. THEMATICS: a simple computational predictor of enzyme function from structure;Ondrechen;Proc Natl Acad Sci USA,2001

5. Prediction of functionally important residues based solely on the computed energetics of protein structure;Elcock;J Mol Biol,2001

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