Spirocyclic Chromenopyrazole Inhibitors Disrupting the Interaction between the RNA‐Binding Protein LIN28 and Let‐7

Author:

Borgelt Lydia123,Huang Fubao12,Hohnen Lisa124,Qiu Xiaqiu123,Goebel Georg L.123,Hommen Pascal123,Wu Peng12ORCID

Affiliation:

1. Chemical Genomics Centre Max Planck Institute of Molecular Physiology Otto-Hahn Str. 15 Dortmund 44227 Germany

2. Department of Chemical Biology Max Planck Institute of Molecular Physiology Otto-Hahn Str. 11 Dortmund 44227 Germany

3. Faculty of Chemistry and Chemical Biology TU Dortmund University Otto-Hahn Str. 6 Dortmund 44227 Germany

4. Faculty of Chemistry and Biochemistry Ruhr-University Bochum Universitätsstr. 150 Bochum 44780 Germany

Abstract

AbstractSmall‐molecule inhibitors of the RNA‐binding and regulating protein LIN28 have the potential to be developed as chemical probes for biological perturbation and as therapeutic candidates. Reported small molecules disrupting the interaction between LIN28 and let‐7 miRNA suffer from moderate to weak inhibitory activity and flat structure‐activity relationship, which hindered the development of next‐generation LIN28 inhibitors that warrant further evaluations. We report herein the identification of new LIN28 inhibitors utilizing a spirocyclization strategy based on a chromenopyrazole scaffold. Representative compounds 25 showed potent in vitro inhibitory activity against LIN28‐let‐7 interaction and single‐digit micromolar potency in inhibiting the proliferation of LIN28‐expressing JAR cancer cells. The spirocyclic compound 5 incorporated a position that is amenable for functional group appendage and further structural modifications. The binding mode of compound 5 with the LIN28 cold shock domain was rationalized via a molecular docking analysis.

Funder

AstraZeneca

Merck KGaA

Max-Planck-Gesellschaft

Volkswagen Foundation

Boehringer Ingelheim Stiftung

Publisher

Wiley

Subject

Organic Chemistry,Molecular Biology,Molecular Medicine,Biochemistry

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