The conservation of gene models can support genome annotation

Author:

Tay Fernandez Cassandria G.1,Bayer Philipp E.1ORCID,Petereit Jakob1,Varshney Rajeev23ORCID,Batley Jacqueline1ORCID,Edwards David1ORCID

Affiliation:

1. School of Biological Sciences and Institute of Agriculture University of Western Australia Perth Western Australia Australia

2. State Agricultural Biotechnology Centre, Centre for Crop and Food Innovation, Food Futures Institute Murdoch University Murdoch Western Australia Australia

3. Centre of Excellence in Genomics & Systems Biology International Crops Research Institute for the Semi‐Arid Tropics (ICRISAT) Hyderabad Telangana India

Abstract

AbstractMany genome annotations include false‐positive gene models, leading to errors in phylogenetic and comparative studies. Here, we propose a method to support gene model prediction based on evolutionary conservation and use it to identify potentially erroneous annotations. Using this method, we developed a set of 15,345 representative gene models from 12 legume assemblies that can be used to support genome annotations for other legumes.

Funder

Australian Research Council

Publisher

Wiley

Subject

Plant Science,Agronomy and Crop Science,Genetics

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