DGAMDA: Predicting miRNA‐disease association based on dynamic graph attention network

Author:

Jia ChangXin1,Wang FuYu2ORCID,Xing Baoxiang3,Li ShaoNa1,Zhao Yang1,Li Yu1,Wang Qing4

Affiliation:

1. Department of Anesthesiology the Affiliated Hospital of Qingdao University Qingdao People's Republic of China

2. College of Computer Science and Technology China University of Petroleum Qingdao People's Republic of China

3. Department of Obstetrics the Affiliated Hospital of Qingdao University Qingdao People's Republic of China

4. Department of Endocrine and Metabolic the Affiliated Hospital of Qingdao University Qingdao People's Republic of China

Abstract

AbstractMiRNA (microRNA)‐disease association prediction has essential applications for early disease screening. The process of traditional biological experimental validation is both time‐consuming and expensive. However, as artificial intelligence technology continues to advance, computational methods have become efficient tools for predicting miRNA‐disease associations. These methods often rely on the combination of multiple sources of association data and require improved feature mining. This study proposes a dynamic graph attention‐based association prediction model, DGAMDA, which combines feature mapping and dynamic graph attention mechanisms through feature mining on a single miRNA‐disease association network. DGAMDA effectively solves the problems of feature heterogeneity and inadequate feature mining by previous static graph attention mechanisms and achieves high‐precision feature mining and association scoring prediction. We conducted a five‐fold cross‐validation experiment and obtained the mean values of Accuracy, Precision, Recall, and F1‐score, which were .8986, .8869, .9115, and .8984, respectively. Our proposed model outperforms other advanced models in terms of experimental results, demonstrating its effectiveness in feature mining and association prediction based on a single association network. In addition, our model can also be used to predict miRNAs associated with unknown diseases.

Publisher

Wiley

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