Predicting redox potentials by graph‐based machine learning methods

Author:

Jia Linlin1ORCID,Brémond Éric2ORCID,Zaida Larissa2,Gaüzère Benoit3ORCID,Tognetti Vincent4ORCID,Joubert Laurent4

Affiliation:

1. The PRG Group, Institute of Computer Science University of Bern Bern Switzerland

2. Université Paris Cité, ITODYS, CNRS Paris France

3. LITIS Univ Rouen Normandie, INSA Rouen Normandie, Université Le Havre Normandie, Normandie Univ Rouen France

4. Normandy Univ., COBRA UMR 6014 & FR 3038, Université de Rouen, INSA Rouen, CNRS Mont St Aignan Cedex France

Abstract

AbstractThe evaluation of oxidation and reduction potentials is a pivotal task in various chemical fields. However, their accurate prediction by theoretical computations, which is a complementary task and sometimes the only alternative to experimental measurement, may be often resource‐intensive and time‐consuming. This paper addresses this challenge through the application of machine learning techniques, with a particular focus on graph‐based methods (such as graph edit distances, graph kernels, and graph neural networks) that are reviewed to enlighten their deep links with theoretical chemistry. To this aim, we establish the ORedOx159 database, a comprehensive, homogeneous (with reference values stemming from density functional theory calculations), and reliable resource containing 318 one‐electron reduction and oxidation reactions and featuring 159 large organic compounds. Subsequently, we provide an instructive overview of the good practice in machine learning and of commonly utilized machine learning models. We then assess their predictive performances on the ORedOx159 dataset through extensive analyses. Our simulations using descriptors that are computed in an almost instantaneous way result in a notable improvement in prediction accuracy, with mean absolute error (MAE) values equal to 5.6 kcal mol for reduction and 7.2 kcal mol for oxidation potentials, which paves a way toward efficient in silico design of new electrochemical systems.

Publisher

Wiley

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