Integration of QUARK and I-TASSER for Ab Initio Protein Structure Prediction in CASP11-Reference-Cited by-同舟云学术

Integration of QUARK and I-TASSER for Ab Initio Protein Structure Prediction in CASP11

Published:2015-09-23 Issue: Volume:84 Page:76-86
ISSN:0887-3585
Container-title:Proteins: Structure, Function, and Bioinformatics
language:en
Short-container-title:Proteins

Author:

Zhang Wenxuan¹²,Yang Jianyi¹²,He Baoji¹²,Walker Sara Elizabeth¹²,Zhang Hongjiu¹²,Govindarajoo Brandon¹²,Virtanen Jouko¹²,Xue Zhidong¹²,Shen Hong-Bin¹²,Zhang Yang¹²

Affiliation:

1. Department of Computational Medicine and Bioinformatics; University of Michigan; Ann Arbor Michigan 48109

2. Department of Biological Chemistry; University of Michigan; Ann Arbor Michigan 48109

Funder

National Institute of General Medical Sciences

Publisher

Wiley

Subject

Molecular Biology,Biochemistry,Structural Biology

Reference36 articles.

1. Phase transition for a hard sphere system;Alder;J Chem Phys,1957

2. CHARMM: a program for macromolecular energy, minimization, and dynamics calculations;Brooks;J Comput Chem,1983

3. Development and testing of a general amber force field;Wang;J Comput Chem,2004

4. An evolutionary approach to folding small alpha-helical proteins that uses sequence information and an empirical guiding fitness function;Bowie;Proc Natl Acad Sci USA,1994

5. Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and Bayesian scoring functions;Simons;J Mol Biol,1997

Cited by 63 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. Fragment-Based Protein Structure Prediction, Where Are We Now?;Journal of Computational Biophysics and Chemistry;2024-01-31

2. Thermococcus kodakarensis TK0353 is a novel AP lyase with a new fold;Journal of Biological Chemistry;2024-01

3. ConPep: Prediction of peptide contact maps with pre-trained biological language model and multi-view feature extracting strategy;Computers in Biology and Medicine;2023-12

4. Integrating deep learning, threading alignments, and a multi‐MSA strategy for high‐quality protein monomer and complex structure prediction in CASP15;Proteins: Structure, Function, and Bioinformatics;2023-08-31

5. Origin of Correlations between Local Conformational States of Consecutive Amino Acid Residues and Their Role in Shaping Protein Structures and in Allostery;The Journal of Physical Chemistry B;2022-11-11