Energy hyperspace for stacking interaction inAU/AUdinucleotide step: Dispersion-corrected density functional theory study-Reference-Cited by-同舟云学术

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Energy hyperspace for stacking interaction inAU/AUdinucleotide step: Dispersion-corrected density functional theory study

Published:2013-10-25 Issue:1 Volume:101 Page:107-120
ISSN:0006-3525
Container-title:Biopolymers
language:en
Short-container-title:Biopolymers

Author:

Mukherjee Sanchita¹,Kailasam Senthilkumar²,Bansal Manju²,Bhattacharyya Dhananjay³

Affiliation:

1. Biophysics Division; Saha Institute of Nuclear Physics; Kolkata 700064 India

2. Molecular Biophysics Unit; Indian Institute of Science; Bangalore 560012 Karnataka India

3. Computational Science Division; Saha Institute of Nuclear Physics; Kolkata 700064 India

Publisher

Wiley

Subject

Organic Chemistry,Biomaterials,Biochemistry,General Medicine,Biophysics

Link

http://onlinelibrary.wiley.com/wol1/doi/10.1002/bip.22289/fullpdf

Reference75 articles.

1. A standard reference frame for the description of nucleic acid base-pair geometry

2. 3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures

3. CURVES+ web server for analyzing and visualizing the helical, backbone and groove parameters of nucleic acid structures

4. Mechanics of sequence-dependent stacking of bases in B-DNA

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1. DNA base sequence specificity through partial intercalation: DFT-D based energy analysis of molecular dynamics snapshots;Journal of Molecular Graphics and Modelling;2020-12

2. Sequence specificity in DNA–drug intercalation: MD simulation and density functional theory approaches;Journal of Computer-Aided Molecular Design;2019-12-09

3. Stacking interactions involving non-Watson–Crick basepairs: dispersion corrected density functional theory studies;Physical Chemistry Chemical Physics;2017

4. Conformational Energy Landscape of the Ritonavir Molecule;The Journal of Physical Chemistry B;2016-05-10

5. Hybrid simulation approach incorporating microscopic interaction along with rigid body degrees of freedom for stacking between base pairs;Biopolymers;2016-01-28

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