Fast search algorithms for computational protein design-Reference-Cited by-同舟云学术

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Fast search algorithms for computational protein design

Published:2016-02-02 Issue:12 Volume:37 Page:1048-1058
ISSN:0192-8651
Container-title:Journal of Computational Chemistry
language:en
Short-container-title:J. Comput. Chem.

Author:

Traoré Seydou¹²³,Roberts Kyle E.⁴,Allouche David⁵,Donald Bruce R.⁴,André Isabelle¹²³,Schiex Thomas⁵,Barbe Sophie¹²³

Affiliation:

1. Université De Toulouse, INSA, UPS, INP, LISBP; 135 Avenue de Rangueil Toulouse F-31077 France

2. INRA, UMR792, Ingénierie des Systèmes Biologiques et des Procédés; Toulouse F-31400 France

3. CNRS, UMR5504; Toulouse F-31400 France

4. Department of Biochemistry; Department of Computer Science; Department of Chemistry; Duke University; Durham North Carolina

5. Unité de Mathématiques et Informatique Appliquées, Toulouse, UR 875, INRA; Castanet Tolosan F-31320 France

Funder

Agence Nationale de la Recherche

institut National de la Recherche Agronomique

Region Midi-Pyrénées

National Institutes of Health

Publisher

Wiley

Subject

Computational Mathematics,General Chemistry

Link

http://onlinelibrary.wiley.com/wol1/doi/10.1002/jcc.24290/fullpdf

Reference53 articles.

1. Computational structure-based redesign of enzyme activity

2. Predicting resistance mutations using protein design algorithms

3. Accurate design of co-assembling multi-component protein nanomaterials

4. Structure-Based Design of Supercharged, Highly Thermoresistant Antibodies

5. Computational design of affinity and specificity at protein–protein interfaces

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1. Complete combinatorial mutational enumeration of a protein functional site enables sequence‐landscape mapping and identifies highly‐mutated variants that retain activity;Protein Science;2024-07-11

2. Designing symmetrical multi-component proteins using a hybrid generative AI approach;2024-06-15

3. From De Novo Design to Redesign: Harnessing Computational Protein Design for Understanding SARS-CoV-2 Molecular Mechanisms and Developing Therapeutics;The Journal of Physical Chemistry B;2023-10-10

4. Identification, Characterization, and Computer-Aided Rational Design of a Novel Thermophilic Esterase from Geobacillus subterraneus, and Application in the Synthesis of Cinnamyl Acetate;Applied Biochemistry and Biotechnology;2023-09-15

5. ZymePackNet: rotamer-sampling free graph neural network method for protein sidechain prediction;2023-05-06

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