Scalable Genomic Assembly through Parallel de Bruijn Graph Construction for Multiple K-mers-Reference-Cited by-同舟云学术

Scalable Genomic Assembly through Parallel de Bruijn Graph Construction for Multiple K-mers

Published:2017-08-20 Issue: Volume: Page:
ISSN:
Container-title:Proceedings of the 8th ACM International Conference on Bioinformatics, Computational Biology,and Health Informatics
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Author:

Mahadik Kanak¹,Wright Christopher¹,Kulkarni Milind¹,Bagchi Saurabh¹,Chaterji Somali²

Affiliation:

1. Purdue University, West Lafayette, IN, USA

2. Purdue Unviersity, West Lafayatte, IN, USA

Funder

National Science Foundation

Publisher

ACM

Link

https://dl.acm.org/doi/pdf/10.1145/3107411.3107482

Reference17 articles.

1. SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

2. Ray: Simultaneous Assembly of Reads from a Mix of High-Throughput Sequencing Technologies

3. Phillip EC Compeau Pavel A Pevzner and Glenn Tesler. 2011. How to apply de Bruijn graphs to genome assembly. Nature biotechnology Vol. 29 11 (2011) 987--991. Phillip EC Compeau Pavel A Pevzner and Glenn Tesler. 2011. How to apply de Bruijn graphs to genome assembly. Nature biotechnology Vol. 29 11 (2011) 987--991.

4. HipMer

5. High-quality draft assemblies of mammalian genomes from massively parallel sequence data

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