GGN: a model-free, data-driven deep learning framework for reconstructing gene regulatory networks

Author:

Mao Guo1ORCID,Zuo Ke1ORCID,Pang Zhengbin1ORCID,Liu Jie1ORCID

Affiliation:

1. National University of Defense Technology, China

Publisher

ACM

Reference38 articles.

1. Hanley  J A and McNeil B J. 1982. The meaning and use of the area under a receiver operating characteristic (ROC) curve.Radiology 143, 1 ( 1982 ), 29–36. https://doi.org/10.1148/radiology.143.1.7063747 arXiv:https://doi.org/10.1148/radiology.143.1.7063747PMID: 7063747. 10.1148/radiology.143.1.7063747 Hanley J A and McNeil B J. 1982. The meaning and use of the area under a receiver operating characteristic (ROC) curve.Radiology 143, 1 (1982), 29–36. https://doi.org/10.1148/radiology.143.1.7063747 arXiv:https://doi.org/10.1148/radiology.143.1.7063747PMID: 7063747.

2. Butte AJ and Kohane IS. 2000. Mutual information relevance networks: functional genomic clustering using pairwise entropy measurements.Pac Symp Biocomput (2000) 418-29. https://doi.org/doi: 10.1142/9789814447331_0040 10.1142/9789814447331_0040

3. Butte AJ and Kohane IS. 2000. Mutual information relevance networks: functional genomic clustering using pairwise entropy measurements.Pac Symp Biocomput (2000) 418-29. https://doi.org/doi: 10.1142/9789814447331_0040

4. Huynh- Thu Vân Anh and Geurts Pierre . 2018. dynGENIE3: dynamical GENIE3 for the inference of gene networks from time series expression data. Scientific Reports 8 (02 2018 ), 3384–8. https://doi.org/10.1038/s41598-018-21715-0 10.1038/s41598-018-21715-0 Huynh-Thu Vân Anh and Geurts Pierre. 2018. dynGENIE3: dynamical GENIE3 for the inference of gene networks from time series expression data. Scientific Reports 8 (02 2018), 3384–8. https://doi.org/10.1038/s41598-018-21715-0

5. Larkin Aoife , Marygold Steven J, Antonazzo Giulia , Attrill Helen , dos Santos Gilberto , Garapati Phani V, Goodman Joshua L, Gramates L Sian, Millburn Gillian, Strelets Victor B, Tabone Christopher J, Thurmond Jim, and FlyBase Consortium. 2020 . FlyBase: updates to the Drosophila melanogaster knowledge base. Nucleic Acids Research 49, D1 (11 2020), D899–D907. https://doi.org/10.1093/nar/gkaa1026 arXiv:https://academic.oup.com/nar/article-pdf/49/D1/D899/35364735/gkaa1026.pdf 10.1093/nar Larkin Aoife, Marygold Steven J, Antonazzo Giulia, Attrill Helen, dos Santos Gilberto, Garapati Phani V, Goodman Joshua L, Gramates L Sian, Millburn Gillian, Strelets Victor B, Tabone Christopher J, Thurmond Jim, and FlyBase Consortium. 2020. FlyBase: updates to the Drosophila melanogaster knowledge base. Nucleic Acids Research 49, D1 (11 2020), D899–D907. https://doi.org/10.1093/nar/gkaa1026 arXiv:https://academic.oup.com/nar/article-pdf/49/D1/D899/35364735/gkaa1026.pdf

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