MYC Induces Oncogenic Stress through RNA Decay and Ribonucleotide Catabolism in Breast Cancer

Author:

Meena Jitendra K.12ORCID,Wang Jarey H.23ORCID,Neill Nicholas J.124ORCID,Keough Dianne5ORCID,Putluri Nagireddy6ORCID,Katsonis Panagiotis4ORCID,Koire Amanda M.4ORCID,Lee Hyemin7ORCID,Bowling Elizabeth A.12ORCID,Tyagi Siddhartha2ORCID,Orellana Mayra2ORCID,Dominguez-Vidaña Rocio2ORCID,Li Heyuan2ORCID,Eagle Kenneth4ORCID,Danan Charles4ORCID,Chung Hsiang-Ching2ORCID,Yang Andrew D.1243ORCID,Wu William23ORCID,Kurley Sarah J.2ORCID,Ho Brian M.23ORCID,Zoeller Joseph R.123ORCID,Olson Calla M.12ORCID,Meerbrey Kristen L.12ORCID,Lichtarge Olivier4ORCID,Sreekumar Arun6ORCID,Dacso Clifford C.6ORCID,Guddat Luke W.5ORCID,Rejman Dominik8ORCID,Hocková Dana8,Janeba Zlatko8ORCID,Simon Lukas M.1ORCID,Lin Charles Y.1249ORCID,Pillon Monica C.12ORCID,Westbrook Thomas F.1249ORCID

Affiliation:

1. Therapeutic Innovation Center (THINC), Baylor College of Medicine, Houston, Texas. 1

2. Verna & Marrs McLean Department of Biochemistry and Molecular Pharmacology, Baylor College of Medicine, Houston, Texas. 2

3. Medical Scientist Training Program, Baylor College of Medicine, Houston, Texas. 4

4. Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas. 3

5. The School of Chemistry and Molecular Biosciences, The University of Queensland, Brisbane, Australia. 8

6. Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston, Texas. 5

7. Department of Experimental Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, Texas. 6

8. Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Prague, Czech Republic. 7

9. Dan L Duncan Comprehensive Cancer Center, Baylor College of Medicine, Houston, Texas. 9

Abstract

Abstract Upregulation of MYC is a hallmark of cancer, wherein MYC drives oncogenic gene expression and elevates total RNA synthesis across cancer cell transcriptomes. Although this transcriptional anabolism fuels cancer growth and survival, the consequences and metabolic stresses induced by excess cellular RNA are poorly understood. Herein, we discover that RNA degradation and downstream ribonucleotide catabolism is a novel mechanism of MYC-induced cancer cell death. Combining genetics and metabolomics, we find that MYC increases RNA decay through the cytoplasmic exosome, resulting in the accumulation of cytotoxic RNA catabolites and reactive oxygen species. Notably, tumor-derived exosome mutations abrogate MYC-induced cell death, suggesting excess RNA decay may be toxic to human cancers. In agreement, purine salvage acts as a compensatory pathway that mitigates MYC-induced ribonucleotide catabolism, and inhibitors of purine salvage impair MYC+ tumor progression. Together, these data suggest that MYC-induced RNA decay is an oncogenic stress that can be exploited therapeutically. Significance: MYC is the most common oncogenic driver of poor-prognosis cancers but has been recalcitrant to therapeutic inhibition. We discovered a new vulnerability in MYC+ cancer where MYC induces cell death through excess RNA decay. Therapeutics that exacerbate downstream ribonucleotide catabolism provide a therapeutically tractable approach to TNBC (Triple-negative Breast Cancer) and other MYC-driven cancers.

Funder

National Institute of Virology and Bacteriology

Cancer Prevention and Research Institute of Texas

National Cancer Institute

National Institute of Environmental Health Sciences

National Institute of General Medical Sciences

National Institutes of Health

Mark Foundation For Cancer Research

Susan G. Komen

U.S. Department of Defense

Welch Foundation

Publisher

American Association for Cancer Research (AACR)

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