Isolation of an H2‐dependent electron‐bifurcating CO2‐reducing megacomplex with MvhB polyferredoxin from Methanothermobacter marburgensis

Abstract

In the hydrogenotrophic methanogenic pathway, formylmethanofuran dehydrogenase (Fmd) catalyzes the formation of formylmethanofuran through reducing CO2. Heterodisulfide reductase (Hdr) provides two low potential electrons for the Fmd reaction using a flavin‐based electron‐bifurcating mechanism. [NiFe]‐hydrogenase (Mvh) or formate dehydrogenase (Fdh) complexes with Hdr and provides electrons to Hdr from H2 and formate, or the reduced form of F420, respectively. Recently, an Fdh‐Hdr complex was purified as a 3‐MDa megacomplex that contained Fmd, and its three‐dimensional structure was elucidated by cryo‐electron microscopy. In contrast, the Mvh‐Hdr complex has been characterized only as a complex without Fmd. Here, we report the isolation and characterization of a 1‐MDa Mvh‐Hdr‐Fmd megacomplex from Methanothermobacter marburgensis. After anion‐exchange and hydrophobic chromatography was performed, the proteins with Hdr activity eluted in the 1‐ and 0.5‐MDa fractions during size exclusion chromatography. Considering the apparent molecular mass and the protein profile in the fractions, the 1‐MDa megacomplex was determined to be a dimeric Mvh‐Hdr‐Fmd complex. The megacomplex fraction contained a polyferredoxin subunit MvhB, which contains 12 [4Fe‐4S]‐clusters. MvhB polyferredoxin has never been identified in the previously purified Mvh‐Hdr and Fmd preparations, suggesting that MvhB polyferredoxin is stabilized by the binding between Mvh‐Hdr and Fmd in the Mvh‐Hdr‐Fmd complex. The purified Mvh‐Hdr‐Fmd megacomplex catalyzed electron‐bifurcating reduction of [13C]‐CO2 to form [13C]‐formylmethanofuran in the absence of extrinsic ferredoxin. These results demonstrated that the subunits in the Mvh‐Hdr‐Fmd megacomplex are electronically connected for the reduction of CO2, which likely involves MvhB polyferredoxin as an electron relay.