Evolutionary analysis of seasonal influenza A viruses in Pakistan 2020–2023

Author:

Badar Nazish1ORCID,Ikram Aamer2,Salman Muhammad1,Saeed Sidra1,Mirza Hamza Ahmed1,Ahad Abdul1ORCID,Umair Massab1,Farooq Umer3

Affiliation:

1. Public Health Laboratories Division National Institute of Health Islamabad Pakistan

2. National Institute of Health Islamabad Pakistan

3. National Agricultural Research Center Islamabad Pakistan

Abstract

AbstractIntroductionInfluenza A viruses cause global health concerns due to their high amino acid substitution rates. They are linked to yearly seasonal epidemics and occasional pandemics. This study focused on sequencing influenza A virus strains in Pakistan.Materials and MethodsWe analyzed the genetic characteristics of influenza A(H1N1)pdm09 and A(H3N2) viruses circulating in Pakistan from January 2020 to January 2023. Whole genome sequences from influenza A (n = 126) virus isolates were amplified and sequenced by the Oxford Nanopore (MinION) platform.ResultsThe HA genes of influenza A(H1N1)pdm09 underwent amino acid substitutions at positions K54Q, A186T, Q189E, E224A, R259K, and K308R in sequenced samples. The HA genes of influenza A(H3N2) had amino acid substitutions at G53D, E83K, D104G, I140M, S205F, A212T, and K276R in the sequenced samples. Furthermore, the HA gene sequences of influenza A(H1N1)pdm09 in this study belonged to subclade 6B.1A.5a.2a. Similarly, the HA gene sequences of influenza A(H3N2) were classified under six subclades (3C.3a.1 and 3C.2a1b.2a [2, 2a.1, 2b, 2c, and 2a.3b]). Notably, amino acid substitutions in other gene segments of influenza A(H1N1)pdm09 and A(H3N2) were also found.ConclusionThese findings indicate influenza A(H1N1)pdm09 and A(H3N2) viruses co‐circulated during the 2020–2023 influenza season in Pakistan. Continued surveillance is crucial for real‐time monitoring of possible high‐virulence variation and their relevance to existing vaccine strains.

Funder

World Health Organization

Publisher

Wiley

Cited by 1 articles. 订阅此论文施引文献 订阅此论文施引文献,注册后可以免费订阅5篇论文的施引文献,订阅后可以查看论文全部施引文献

1. Improving Seasonal Influenza Forecasting Using Time Series Machine Learning Techniques;Journal of Information Systems Engineering and Management;2024-09-09

同舟云学术

1.学者识别学者识别

2.学术分析学术分析

3.人才评估人才评估

"同舟云学术"是以全球学者为主线,采集、加工和组织学术论文而形成的新型学术文献查询和分析系统,可以对全球学者进行文献检索和人才价值评估。用户可以通过关注某些学科领域的顶尖人物而持续追踪该领域的学科进展和研究前沿。经过近期的数据扩容,当前同舟云学术共收录了国内外主流学术期刊6万余种,收集的期刊论文及会议论文总量共计约1.5亿篇,并以每天添加12000余篇中外论文的速度递增。我们也可以为用户提供个性化、定制化的学者数据。欢迎来电咨询!咨询电话:010-8811{复制后删除}0370

www.globalauthorid.com

TOP

Copyright © 2019-2024 北京同舟云网络信息技术有限公司
京公网安备11010802033243号  京ICP备18003416号-3