Best practices for collecting and preserving marine mammal biological samples in the ‘omics era

Author:

Van Cise Amy M.12ORCID,Switzer Alexandra D.3,Apprill Amy4,Champagne Cory D.5,Chittaro Paul M.6,Dudek Natasha K.7,Gavery Mackenzie R.6,Hancock‐Hanser Brittany L.8,Harmon Alaina C.8,Jaffe Alexander L.9,Kellar Nicholas M.8ORCID,Miller Carolyn A.4,Morin Phillip A.8ORCID,Nelms Sarah E.10,Robertson Kelly M.8,Schultz Irvin R.6,Timmins‐Schiffman Emma11,Unal Ebru12,Parsons Kim M.13

Affiliation:

1. North Gulf Oceanic Society, Visiting Scientist at Northwest Fisheries Science Center National Oceanic and Atmospheric Administration Seattle Washington

2. School of Aquatic and Fishery Sciences, University of Washington Seattle Washington

3. Department of Microbiology and Immunology School of Medicine, Stanford University Stanford California

4. Marine Chemistry and Geochemistry Department Woods Hole Oceanographic Institution Woods Hole Massachusetts

5. Division of Biological Sciences School of STEM, University of Washington Bothell Washington

6. Environmental and Fisheries Sciences Division Northwest Fisheries Science Center, National Oceanic and Atmospheric Administration Seattle Washington

7. Department of Computer Science McGill University ‐ Mila‐Québec AI Institute Montreal Quebec Canada

8. Marine Mammal and Turtle Division Southwest Fisheries Science Center, National Oceanic and Atmospheric Administration La Jolla California

9. Department of Earth System Science Stanford University Stanford California

10. Centre for Ecology and Conservation, University of Exeter Cornwall United Kingdom

11. Department of Genome Sciences University of Washington Seattle Washington

12. Mystic Aquarium Mystic Connecticut

13. Conservation Biology Division Northwest Fisheries Science Center, National Oceanic and Atmospheric Administration Seattle Washington

Abstract

AbstractThe recent rise of ‘omics and other molecular research technologies alongside improved techniques for tissue preservation have broadened the scope of marine mammal research. Collecting biological samples from wild marine mammals is both logistically challenging and expensive. To enhance the power of marine mammal research, great effort has been made in both the field and the laboratory to ensure the scientific integrity of samples from collection through processing, supporting the long‐term use of precious samples across a broad range of studies. However, identifying the best methods of sample preservation can be challenging, especially as this technological toolkit continues to evolve and expand. Standardizing best practices could maximize the scientific value of biological samples, foster multi‐institutional collaborative efforts across fields, and improve the quality of individual studies by removing potential sources of error from the collection, handling, and preservation processes. With these aims in mind, we summarize relevant literature, share current expert knowledge, and suggest best practices for sample collection and preservation. This manuscript is intended as a reference resource for scientists interested in exploring collaborative studies and preserving samples in a suitable manner for a broad spectrum of analyses, emphasizing support for ‘omics technologies.

Publisher

Wiley

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