Integrons, transposons and IS elements promote diversification of multidrug resistance plasmids and adaptation of their hosts to antibiotic pollutants from pharmaceutical companies

Author:

Shintani Masaki123ORCID,Vestergaard Gisle4,Milaković Milena5,Kublik Susanne6,Smalla Kornelia7,Schloter Michael6,Udiković‐Kolić Nikolina5

Affiliation:

1. Department of Engineering, Graduate School of Integrated Science and Technology Shizuoka University Shizuoka Japan

2. Research Institute of Green Science and Technology Shizuoka University Shizuoka Japan

3. Japan Collection of Microorganisms RIKEN BioResource Research Center Ibaraki Japan

4. Chr. Hansen A/S Hoersholm Denmark

5. Division for Marine and Environmental Research Ruđer Bošković Institute Croatia

6. Research Unit for Comparative Microbiome Analysis Helmholtz Zentrum München Zagreb Germany

7. Institute for Epidemiology and Pathogen Diagnostics Julius Kühn‐Institut, Federal Research Centre for Cultivated Plants Braunschweig Germany

Abstract

AbstractPlasmids are important vehicles for the dissemination of antibiotic resistance genes (ARGs) among bacteria by conjugation. Here, we determined the complete nucleotide sequences of nine different plasmids previously obtained by exogenous plasmid isolation from river and creek sediments and wastewater from a pharmaceutical company. We identified six IncP/P‐1ε plasmids and single members of IncL, IncN and IncFII‐like plasmids. Genetic structures of the accessory regions of the IncP/P‐1ε plasmids obtained implied that multiple insertions and deletions had occurred, mediated by different transposons and Class 1 integrons with various ARGs. Our study provides compelling evidence that Class 1 integrons, Tn402‐like transposons, Tn3‐like transposons and/or IS26 played important roles in the acquisition of ARGs across all investigated plasmids. Our plasmid sequencing data provide new insights into how these mobile genetic elements could mediate the acquisition and spread of ARGs in environmental bacteria.

Funder

Asahi Glass Foundation

European Cooperation in Science and Technology

Hrvatska Zaklada za Znanost

Japan Agency for Medical Research and Development

Japan Society for the Promotion of Science

Publisher

Wiley

Subject

Ecology, Evolution, Behavior and Systematics,Microbiology

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