Analysis of KDM3A and DBX2 gene polymorphism for differentiation of Sus scrofa domesticus duroc pigs

Author:

Kipen V. N.1ORCID,Mikhailova M. E.1ORCID,Snytkov E. V.1ORCID,Sheyko R. I.1ORCID

Affiliation:

1. Institute of Genetics and Cytology of the National Academy of Sciences of Belarus

Abstract

Genotyping of individuals of 7 commercial breeds of domestic pigs was carried out: Duroc, Landrace, Belarusian Large White, Belarusian Black-and-White, Belarusian meat, Pietrain and Yorkshire for the KDM3A and DBX2 genes. The high breed-specific potential of polymorphic loci g.58335217A>G (KDM3A gene) and g.75953650G>T (DBX2 gene) for differentiation of Duroc pigs of the species Sus scrofa domesticus was confirmed. A test model for differentiation of Duroc individuals by bioinformatic assessment of a total contribution of two SNPs of the KDM3A and DBX2 genes was proposed. This test model has no analogues in the world, and its estimation accuracy and specificity are 98.76 and 99.68 %, respectively. Using PCR-RFLP, a fast and simple approach has been developed to differentiate the Duroc breed based on the proposed test model. 

Publisher

Publishing House Belorusskaya Nauka

Subject

General Medicine

Reference10 articles.

1. Sheiko I. P., Smirnov V. S. Pig breeding. Minsk, 2005. 384 p. (in Russian).

2. Ramos A. M., Megens H. J., Crooijmans R. P. M. A., Schook L. B., M. Groenen A. M. Identification of high utility SNPs for population assignment and traceability purposes in the pig using high-throughput sequencing. Animal Genetics, 2011, vol. 42, no. 6, pp. 613–620. https://doi.org/10.1111/j.1365-2052.2011.02198.x

3. Sheyko I. P., Sheyko R. I., Timoshenko T. N. Belarusian inbreed type of pigs in duroc breed. Vestsі Natsyyanal’nay akademіі navuk Belarusі. Seryya agrarnykh navuk = Proceedings of the National Academy of Sciences of Belarus. Agrarian series, 2016, no. 2, pp. 92–97 (in Russian).

4. Kipen V. N. Using genome-wide data from NGS projects to find a solution to the forensic problem of differentiating wild boars and domestic pigs based on SNP analysis. Molekulyarnaya diagnostika–2017: IX Vserossiiskaya nauchno-prakticheskaya konferentsiya, 18–20 aprelya 2017 g.: sbornik materialov [Molecular diagnostics–2017: IX All-Russian scientific and practical conference, April 18–20, 2017: collection of materials]. Moscow, 2017, pp. 305–306 (in Russian).

5. Kipen V. N., Rabcava A. O., Kotava S. A., Zhurina N. V., Handza A. I., Tsybovsky I. S. Polymorphism analysis of MC1R and NR6A1 genes to evaluate the level of introgression of domestic swine (Sus scrofa domesticus) genes in wild boar (Sus scrofa scrofa) population. Molekulyarnaya i prikladnaya genetika [Molecular and Applied Genetics]. Minsk, 2019, vol. 26, pp. 83–95 (in Russian).

同舟云学术

1.学者识别学者识别

2.学术分析学术分析

3.人才评估人才评估

"同舟云学术"是以全球学者为主线,采集、加工和组织学术论文而形成的新型学术文献查询和分析系统,可以对全球学者进行文献检索和人才价值评估。用户可以通过关注某些学科领域的顶尖人物而持续追踪该领域的学科进展和研究前沿。经过近期的数据扩容,当前同舟云学术共收录了国内外主流学术期刊6万余种,收集的期刊论文及会议论文总量共计约1.5亿篇,并以每天添加12000余篇中外论文的速度递增。我们也可以为用户提供个性化、定制化的学者数据。欢迎来电咨询!咨询电话:010-8811{复制后删除}0370

www.globalauthorid.com

TOP

Copyright © 2019-2024 北京同舟云网络信息技术有限公司
京公网安备11010802033243号  京ICP备18003416号-3