Coarse-grained modeling reveals the impact of supercoiling and loop length in DNA looping kinetics-Reference-Cited by-同舟云学术

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Coarse-grained modeling reveals the impact of supercoiling and loop length in DNA looping kinetics

Published:2022-05 Issue:10 Volume:121 Page:1949-1962
ISSN:0006-3495
Container-title:Biophysical Journal
language:en
Short-container-title:Biophysical Journal

Author:

Starr Charles H.,Bryant Zev^ORCID,Spakowitz Andrew J.^ORCID

Funder

National Science Foundation

NIH

NSF

Publisher

Elsevier BV

Subject

Biophysics

Reference90 articles.

1. DNA looping in gene regulation: from the assembly of macromolecular complexes to the control of transcriptional noise;Vilar;Curr. Opin. Genet. Dev.,2005

2. Getting the genome in shape: the formation of loops, domains, and compartments;Bouwman;Genome Biol.,2015

3. DNA looping;Schleif;Annu. Rev. Biochem.,1992

4. Ring-closure probabilities for twisted wormlike chains. Applications to DNA;Shimada;Macromolecules,1984

5. Wormlike chain statistics with twist and fixed ends;Spakowitz;Europhys. Lett.,2006

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1. Attractive crowding effect on passive and active polymer looping kinetics;The Journal of Chemical Physics;2024-04-03

2. Chromatinization modulates topoisomerase II processivity;Nature Communications;2023-10-27

3. Chromatinization Modulates Topoisomerase II Processivity;2023-10-04

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