Modeling, Simulations, and Bioinformatics at the Service of RNA Structure-Reference-Cited by-同舟云学术

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Modeling, Simulations, and Bioinformatics at the Service of RNA Structure

Published:2019-01 Issue:1 Volume:5 Page:51-73
ISSN:2451-9294
Container-title:Chem
language:en
Short-container-title:Chem

Author:

Dans Pablo D.^ORCID,Gallego Diego,Balaceanu Alexandra,Darré Leonardo,Gómez Hansel,Orozco Modesto

Funder

MINECO

European Research Council

Publisher

Elsevier BV

Subject

Materials Chemistry,Biochemistry, medical,General Chemical Engineering,Environmental Chemistry,Biochemistry,General Chemistry

Reference152 articles.

1. Physics-based all-atom modeling of RNA energetics and structure;Smith;Wiley Interdiscip. Rev. RNA,2017

2. How to understand atomistic molecular dynamics simulations of RNA and protein-RNA complexes?;Šponer;Wiley Interdiscip. Rev. RNA,2017

3. Revised RNA dihedral parameters for the amber force field improve RNA molecular dynamics;Aytenfisu;J. Chem. Theor. Comput.,2017

4. Comparative assessment of different RNA tetranucleotides from the DFT-D3 and force field perspective;Szabla;J. Phys. Chem. B,2016

5. Quantum chemical benchmark study on 46 RNA backbone families using a dinucleotide unit;Kruse;J. Chem. Theor. Comput.,2015

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1. Unlocking precision in aptamer engineering: a case study of the thrombin binding aptamer illustrates why modification size, quantity, and position matter;Nucleic Acids Research;2024-09-01

2. On the Power and Challenges of Atomistic Molecular Dynamics to Investigate RNA Molecules;Journal of Chemical Theory and Computation;2024-08-16

3. Frontiers and Challenges of Computing ncRNAs Biogenesis, Function and Modulation;Journal of Chemical Theory and Computation;2024-01-30

4. Unraveling the complexity: Advanced methods in analyzing DNA, RNA, and protein interactions;Advances in Cancer Research;2024

5. The pseudotorsional space of RNA;RNA;2023-10-04

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