Hydrogen bonding versus stacking stabilization by modified nucleobases incorporated in PNA·DNA duplexes
Author:
Publisher
Elsevier BV
Subject
Organic Chemistry,Biochemistry,Biophysics
Reference23 articles.
1. Stacked-unstacked equilibrium at the nick site of DNA;Protozanove;J. Mol. Biol.,2004
2. Base-stacking and base-pairing contributions into thermal stability of the DNA double helix;Yakovchuk;Nucleic Acids Res.,2006
3. Hydrogen bonding, base-stacking and steric effects in DNA replication;Kool;Annu. Rev. Biophys. Biomol. Struct.,2001
4. Efficient calculation of many stacking and pairing free energies in DNA from a few molecular dynamics simulations;Oostenbrink;Chemistry,2005
5. Stability of DNA duplexes with Watson–Crick base pairs: a predicted model;Sundaralingam;Biochemistry,2004
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1. Mechanical characterization of base analogue modified nucleic acids by force spectroscopy;Physical Chemistry Chemical Physics;2021
2. Peptide Nucleic Acid with Double Face: Homothymine–Homocytosine Bimodal Cα-PNA (bm-Cα-PNA) Forms a Double Duplex of the bm-PNA2:DNA Triplex;The Journal of Organic Chemistry;2020-11-30
3. Nanomechanics of Diaminopurine-Substituted DNA;Biophysical Journal;2019-03
4. Electronic properties of DNA: Description of weak interactions in TATA-box-like chains;Biophysical Chemistry;2018-02
5. Focus on PNA Flexibility and RNA Binding using Molecular Dynamics and Metadynamics;Scientific Reports;2017-02-17
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