ORPA: a fast and efficient phylogenetic analysis method for constructing genome-wide alignments of organelle genomes-Reference-Cited by-同舟云学术

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ORPA: a fast and efficient phylogenetic analysis method for constructing genome-wide alignments of organelle genomes

Published:2023-08 Issue: Volume: Page:
ISSN:1673-8527
Container-title:Journal of Genetics and Genomics
language:en
Short-container-title:Journal of Genetics and Genomics

Author:

Bi Guiqi,Luan Xinxin^ORCID,Yan Jianbin

Funder

National Key Research and Development Program of China

National Key Project for Synthetic Biology

Chinese Academy of Agricultural Sciences

Science, Technology and Innovation Commission of Shenzhen Municipality

Publisher

Elsevier BV

Subject

Genetics,Molecular Biology

Reference20 articles.

1. HomBlocks: a multiple-alignment construction pipeline for organelle phylogenomics based on locally collinear block searching;Bi;Genomics,2018

2. trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses;Capella-Gutiérrez;Bioinformatics,2009

3. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis;Castresana;Mol. Biol. Evol.,2000

4. GET_HOMOLOGUES, a versatile software package for scalable and robust microbial pangenome analysis;Contreras-Moreira;Appl. Environ. Microbiol.,2013

5. BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments;Criscuolo;BMC Evol. Biol.,2010

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