MOCCS: Clarifying DNA-binding motif ambiguity using ChIP-Seq data-Reference-Cited by-同舟云学术

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MOCCS: Clarifying DNA-binding motif ambiguity using ChIP-Seq data

Published:2016-08 Issue: Volume:63 Page:62-72
ISSN:1476-9271
Container-title:Computational Biology and Chemistry
language:en
Short-container-title:Computational Biology and Chemistry

Author:

Ozaki Haruka,Iwasaki Wataru

Funder

Japan Science and Technology Agency (CREST)

Japan Society for the Promotion of Science

Ministry of Education, Culture, Sports, Science, and Technology in Japan

Publisher

Elsevier BV

Subject

Computational Mathematics,Organic Chemistry,Biochemistry,Structural Biology

Reference49 articles.

1. The role of regulatory variation in complex traits and disease;Albert;Nat. Rev. Genet.,2015

2. Serum response factor is essential for mesoderm formation during mouse embryogenesis;Arsenian;EMBO J.,1998

3. DREME: motif discovery in transcription factor ChIP-seq data;Bailey;Bioinformatics,2011

4. Fitting a mixture model by expectation maximization to discover motifs in biopolymers;Bailey,1994

5. GA-binding protein factors, in concert with the coactivator CREB binding protein/p300, control the induction of the interleukin 16 promoter in T lymphocytes;Bannert;Proc. Natl. Acad. Sci. U. S. A.,1999

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1. Transcription factor-binding k-mer analysis clarifies the cell type dependency of binding specificities and cis-regulatory SNPs in humans;BMC Genomics;2023-10-07

2. MOCCS profile analysis clarifies the cell type dependency of transcription factor-binding sequences and cis-regulatory SNPs in humans;2022-04-10

3. MotiMul: A significant discriminative sequence motif discovery algorithm with multiple testing correction;2020 IEEE International Conference on Bioinformatics and Biomedicine (BIBM);2020-12-16

4. MotiMul: A significant discriminative sequence motif discovery algorithm with multiple testing correction;2020-08-24

5. Functional D-box sequences reset the circadian clock and drive mRNA rhythms;Communications Biology;2019-08-08

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