Mini-review: Recent advances in post-translational modification site prediction based on deep learning-Reference-Cited by-同舟云学术

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Mini-review: Recent advances in post-translational modification site prediction based on deep learning

Published:2022 Issue: Volume:20 Page:3522-3532
ISSN:2001-0370
Container-title:Computational and Structural Biotechnology Journal
language:en
Short-container-title:Computational and Structural Biotechnology Journal

Author:

Meng Lingkuan,Chan Wai-Sum,Huang Lei,Liu Linjing,Chen Xingjian,Zhang Weitong,Wang Fuzhou,Cheng Ke,Sun Hongyan,Wong Ka-Chun

Publisher

Elsevier BV

Subject

Computer Science Applications,Genetics,Biochemistry,Structural Biology,Biophysics,Biotechnology

Reference133 articles.

1. Protein posttranslational modifications: the chemistry of proteome diversifications;Walsh;Angew Chem Int Ed Engl,2005

2. https://www.uniprot.org/docs/ptmlist.

3. UniProt C., UniProt: a worldwide hub of protein knowledge, Nucleic Acids Res. 2019; 47: D506-D515. http://10.1093/nar/gky1049.

4. Lee T-Y, Huang H-D, Hung J-H, Huang H-Y, Yang Y-S, Wang T-H. dbPTM: an information repository of protein post-translational modification, Nucleic Acids Res. 2006; 34: D622–D627. http://10.1093/nar/gkj083.

5. Investigation of the impact of PTMs on the protein backbone conformation;Craveur;Amino Acids,2019

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1. Post-translational modification prediction via prompt-based fine-tuning of a GPT-2 model;Nature Communications;2024-08-07

2. UniPTM: Multiple PTM site prediction on full-length protein sequence;2024-08-06

3. PhosAF: An integrated deep learning architecture for predicting protein phosphorylation sites with AlphaFold2 predicted structures;Analytical Biochemistry;2024-07

4. Pathological Impact of Redox Post-Translational Modifications;Antioxidants & Redox Signaling;2024-07-01

5. Global proteomic analysis reveals lysine succinylation is involved in the pathogenesis of hypertrophic scar;Journal of Proteomics;2024-04

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