NASA GeneLab RNA-seq consensus pipeline: Standardized processing of short-read RNA-seq data

Author:

Overbey Eliah G.,Saravia-Butler Amanda M.,Zhang Zhe,Rathi Komal S.ORCID,Fogle Homer,da Silveira Willian A.,Barker Richard J.,Bass Joseph J.,Beheshti Afshin,Berrios Daniel C.ORCID,Blaber Elizabeth A.,Cekanaviciute EgleORCID,Costa Helio A.,Davin Laurence B.,Fisch Kathleen M.ORCID,Gebre Samrawit G.ORCID,Geniza Matthew,Gilbert Rachel,Gilroy SimonORCID,Hardiman GaryORCID,Herranz Raúl,Kidane Yared H.,Kruse Colin P.S.,Lee Michael D.ORCID,Liefeld Ted,Lewis Norman G.,McDonald J. Tyson,Meller Robert,Mishra Tejaswini,Perera Imara Y.,Ray Shayoni,Reinsch Sigrid S.ORCID,Rosenthal Sara BrinORCID,Strong MichaelORCID,Szewczyk Nathaniel J.ORCID,Tahimic Candice G.T.,Taylor Deanne M.ORCID,Vandenbrink Joshua P.,Villacampa AliciaORCID,Weging SilvioORCID,Wolverton ChrisORCID,Wyatt Sarah E.ORCID,Zea Luis,Costes Sylvain V.ORCID,Galazka Jonathan M.ORCID

Funder

NASA

Publisher

Elsevier BV

Subject

Multidisciplinary

Reference50 articles.

1. FastQC: A Quality Control Tool for High Throughput Sequence Data. Babraham Bioinformatics;Andrews,2010

2. Simulation-based comprehensive benchmarking of RNA-seq aligners;Baruzzo;Nat. Methods,2017

3. NASA GeneLab: interfaces for the exploration of space omics data;Berrios;Nucleic Acids Res.,2020

4. Near-optimal probabilistic RNA-seq quantification;Bray;Nat. Biotechnol.,2016

5. Nanopore DNA sequencing and genome assembly on the International space station;Castro-Wallace;Sci. Rep.,2017

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