Bayesian Computing with INLA: A Review

Author:

Rue Håvard1,Riebler Andrea1,Sørbye Sigrunn H.2,Illian Janine B.3,Simpson Daniel P.4,Lindgren Finn K.5

Affiliation:

1. Department of Mathematical Sciences, Norwegian University of Science and Technology, N-7491 Trondheim, Norway;

2. Department of Mathematics and Statistics, The Arctic University of Norway, 9037 Tromsø, Norway

3. Centre for Research into Ecological and Environmental Modelling, School of Mathematics and Statistics, University of St. Andrews, KY16 9LZ Fife, United Kingdom

4. Department of Mathematical Sciences, University of Bath, BA2 7AY Bath, United Kingdom

5. School of Mathematics, The University of Edinburgh, EH9 3FD Edinburgh, United Kingdom

Abstract

The key operation in Bayesian inference is to compute high-dimensional integrals. An old approximate technique is the Laplace method or approximation, which dates back to Pierre-Simon Laplace (1774). This simple idea approximates the integrand with a second-order Taylor expansion around the mode and computes the integral analytically. By developing a nested version of this classical idea, combined with modern numerical techniques for sparse matrices, we obtain the approach of integrated nested Laplace approximations (INLA) to do approximate Bayesian inference for latent Gaussian models (LGMs). LGMs represent an important model abstraction for Bayesian inference and include a large proportion of the statistical models used today. In this review, we discuss the reasons for the success of the INLA approach, the R-INLA package, why it is so accurate, why the approximations are very quick to compute, and why LGMs make such a useful concept for Bayesian computing.

Publisher

Annual Reviews

Subject

Statistics, Probability and Uncertainty,Statistics and Probability

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